PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g104630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | SRS | ||||||||
Protein Properties | Length: 343aa MW: 36757.3 Da PI: 7.9149 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 235.7 | 7.2e-73 | 117 | 270 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqsalsstklssae 95 g+ sCqdCGnqakkdC+h+RCRtCCksrg++C+thvkstWvpaakrrerqqqla++ ++ ++++ e+ +kr+re+ +++++l +t+++s++ Csa11g104630.1 117 GGPSCQDCGNQAKKDCSHMRCRTCCKSRGLECSTHVKSTWVPAAKRRERQQQLASSGQQPQSQSqpqVESVPKRQREHFPSRSNSLVCTRIPSNN 211 6789**************************************************998887777667788999*********************** PP DUF702 96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++ le+ s+P+evss+a+frcvrvssvdd+eee+aY+tavsigGhvfkGiLydqG++e Csa11g104630.1 212 TSSGLEIGSFPPEVSSPAIFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGILYDQGPAE 270 ********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.6E-66 | 118 | 269 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 7.4E-27 | 120 | 162 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.5E-26 | 221 | 268 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MAGFFSLGQG GGRGNSQDHR TNNNPSPSGT ESWLWFRNPN SNANAGGGDV VAPSSYKGTL 60 ELWQHPNNQE IIFQQQQQQR LDLYTSAAGL GVGPSNRNLM ETSDGALMMM RNGSSGGGPS 120 CQDCGNQAKK DCSHMRCRTC CKSRGLECST HVKSTWVPAA KRRERQQQLA SSGQQPQSQS 180 QPQVESVPKR QREHFPSRSN SLVCTRIPSN NTSSGLEIGS FPPEVSSPAI FRCVRVSSVD 240 DEEEEYAYKT AVSIGGHVFK GILYDQGPAE RSSSGGGSQP LNHIAAGPSA SSSSPNVSCN 300 NGVVGSTSDH YIDPASLNYP TPMNTFMTER VRKGVNSTDY EG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g104630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010444807.1 | 0.0 | PREDICTED: protein SHORT INTERNODES-like | ||||
Refseq | XP_010444809.1 | 0.0 | PREDICTED: protein SHORT INTERNODES-like | ||||
Swissprot | Q9XGX0 | 1e-179 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | R0EWR7 | 0.0 | R0EWR7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010444807.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3419 | 28 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 1e-140 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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