PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.0568s0045.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

SRS

Protein Properties

Length: 344aa MW: 36737.4 Da PI: 7.7087

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.0568s0045.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	230.2	3.6e-71	126	275	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 g+ sCqdCGnqakkdCah+RCRtCCksrg++C+thvkstWvpaakrrerqq+la+ ++ +++ + e +kr+re+ ++++++l +t++++ Bostr.0568s0045.1.p 126 GGPSCQDCGNQAKKDCAHMRCRTCCKSRGLECSTHVKSTWVPAAKRRERQQKLASGQHPQSQPQGETVPKRQREHFAANSNSLVCTRIPT 215 6789***********************************************************************************9 PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++ le+ s+P+evss+avfrcvrvssvdd+eee+aY+tavsigGhvfkGiLydqG++e Bostr.0568s0045.1.p 216 NNTS-GLEIGSFPPEVSSPAVFRCVRVSSVDDEEEECAYKTAVSIGGHVFKGILYDQGPAE 275 9765.99*************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.7E-64	127	274	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.9E-27	129	171	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.6E-25	226	273	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MAGFFSLGHG GGDVGRGNSQ DEHHHHHTTN TNNPSPSGTE SWLWCRNPNL NANAAGGDVV 60 PSYKGTLELW QHPNNQEIIF QQQQQQQQRL DLYTSAAGLA VGPSYRSLTE TSGGALMMIR 120 SGSSGGGPSC QDCGNQAKKD CAHMRCRTCC KSRGLECSTH VKSTWVPAAK RRERQQKLAS 180 GQHPQSQPQG ETVPKRQREH FAANSNSLVC TRIPTNNTSG LEIGSFPPEV SSPAVFRCVR 240 VSSVDDEEEE CAYKTAVSIG GHVFKGILYD QGPAERSSSG GGSQPLNLIT AGPSASSSSP 300 NVSCNNGVVG STSDHYIDPA SLNYPTPINT FMTGMHFFSN SRS*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MAGFFSLGHG GGDVGRGNSQ DEHHHHHTTN TNNPSPSGTE SWLWCRNPNL NANAAGGDVV  60
PSYKGTLELW QHPNNQEIIF QQQQQQQQRL DLYTSAAGLA VGPSYRSLTE TSGGALMMIR  120
SGSSGGGPSC QDCGNQAKKD CAHMRCRTCC KSRGLECSTH VKSTWVPAAK RRERQQKLAS  180
GQHPQSQPQG ETVPKRQREH FAANSNSLVC TRIPTNNTSG LEIGSFPPEV SSPAVFRCVR  240
VSSVDDEEEE CAYKTAVSIG GHVFKGILYD QGPAERSSSG GGSQPLNLIT AGPSASSSSP  300
NVSCNNGVVG STSDHYIDPA SLNYPTPINT FMTGMHFFSN SRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.0568s0045.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF152555	0.0	AF152555.1 Arabidopsis thaliana putative zinc finger protein SHI (SHI) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006280764.1	0.0	protein SHORT INTERNODES
Swissprot	Q9XGX0	0.0	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	R0EWR7	0.0	R0EWR7_9BRAS; Uncharacterized protein
STRING	Bostr.0568s0045.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-161	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Bostr.0568s0045.1.p

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]