PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1931_f_19

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

SRS

Protein Properties

Length: 177aa MW: 18811.9 Da PI: 6.4803

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1931_f_19	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	39.7	1.6e-12	35	59	3	27
DUF702 3 sgtasCqdCGnqakkdCaheRCRtC 27 g+++CqdCGnqakkdCah+RCRtC Neem_1931_f_19 35 GGGMNCQDCGNQAKKDCAHMRCRTC 59 6889********************* PP
2	DUF702	82.5	1.1e-25	62	115	101	154
DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 e s++P+e+ss+avfrcvrv+++d+ +e++aYqtav+igGh+fkG+LydqG+e+ Neem_1931_f_19 62 ELSQFPSELSSPAVFRCVRVGAMDNPDEQFAYQTAVNIGGHLFKGLLYDQGPES 115 6789************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.5E-9	37	59	IPR007818	Protein of unknown function DUF702
Pfam	PF05142	2.1E-22	64	114	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	2.4E-25	65	113	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MSNYVSFGVG PSRRNFINAS DDSPRSGFSG MRQGGGGMNC QDCGNQAKKD CAHMRCRTCW 60 LELSQFPSEL SSPAVFRCVR VGAMDNPDEQ FAYQTAVNIG GHLFKGLLYD QGPESSYTAA 120 GESSQQLNLI TGATATTTAT TAPASNPSPA NLIDPSLYPA PLNAFIAGTQ FFPPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF025303	1e-39	EF025303.1 Catharanthus roseus clone 2D81 DNA-binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022769102.1	7e-64	protein SHI RELATED SEQUENCE 5-like isoform X4
Swissprot	Q9LQZ5	8e-33	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A4P1QY18	8e-53	A0A4P1QY18_LUPAN; Uncharacterized protein
STRING	XP_006435091.1	4e-51	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	9e-31	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]