PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g076450.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

SRS

Protein Properties

Length: 339aa MW: 36179.8 Da PI: 8.0571

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g076450.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	236.9	3.2e-73	118	270	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaes 96 g+ sCqdCGnqakkdC+h+RCRtCCksrg++C+thvkstWvpaakrrerqqqla+ ++ +++s+ e+ +kr+re+ +++++l +t+++s+++ Csa02g076450.1 118 GGPSCQDCGNQAKKDCTHMRCRTCCKSRGLECSTHVKSTWVPAAKRRERQQQLASGQQPQSQSQpqVESVPKRQREHFPSRSNSLVCTRIPSNNT 212 6789*************************************************9999888877688999******************** PP DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ le+ s+P+evss+a+frcvrvssvdd+eee+aY+tavsigGhvfkGiLydqG++e Csa02g076450.1 213 SSGLEIGSFPPEVSSPAIFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGILYDQGPAE 270 *****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.4E-66	119	269	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.8E-27	121	163	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.4E-26	221	268	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MAGFFSLGQG GGRGNSQDHR TNNNPSPSGT ESWLWCRNPN SNANAGAGDV VAPSSYKGTL 60 ELWQHPNNQE IIFQQQQQQR LDLYTSAAGL GVGPSNRNLL ETSGGALMMM RNGSSSGGGP 120 SCQDCGNQAK KDCTHMRCRT CCKSRGLECS THVKSTWVPA AKRRERQQQL ASGQQPQSQS 180 QPQVESVPKR QREHFPSRSN SLVCTRIPSN NTSSGLEIGS FPPEVSSPAI FRCVRVSSVD 240 DEEEEYAYKT AVSIGGHVFK GILYDQGPAE RSSSGGGSQP LNLITAGPSA SSSSPNVSCN 300 DGVVGSNSDH YIDPASLSYP TPINTFMTGT HFFSNPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g076450.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010465633.1	0.0	PREDICTED: protein SHORT INTERNODES-like isoform X1
Swissprot	Q9XGX0	0.0	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	R0EWR7	0.0	R0EWR7_9BRAS; Uncharacterized protein
STRING	XP_010465633.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-163	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]