PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02379.1.p
Common NameEUGRSUZ_I02379, LOC104419684
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SRS
Protein Properties Length: 354aa    MW: 37439.3 Da    PI: 7.2578
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02379.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702197.44.5e-611252724154
            DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 
                        ++sCqdCGnqakkdC h RCRtCCksrgf+Ca hvkstWvpaa+rrer +q++ a+ k+ +++++++  +      ++ +   +++   ++s
  Eucgr.I02379.1.p 125 AGISCQDCGNQAKKDCPHLRCRTCCKSRGFQCANHVKSTWVPAARRRERERQQQLAAPKEHHHHHQEQGLQLG---GEAPKRPREKHGRPNTS 214
                       5689*******************************************99666665544444433333222222...22222233322222333 PP

            DUF702  97 kkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                            + +lP++vss+avf+cv+vssvdd  +e++aYqtav+igGhvf+GiLyd+G+++
  Eucgr.I02379.1.p 215 GL-ELVGNLPADVSSPAVFQCVKVSSVDDnPHEQFAYQTAVNIGGHVFRGILYDHGPDH 272
                       33.34556*********************56788***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.3E-60126271IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.6E-25128170IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.2E-25222270IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MARFIPLGAA RSAGGAGDQQ INHPQATAAA EIPWFWYSRS NADDSSAFKG LELWHQNQPQ  60
PQQQLHFFSQ QQQDLYTSAA GLGVGPGGGE ASCNVFSDES SRSGGGFTTL TLAAAAATTG  120
GGMRAGISCQ DCGNQAKKDC PHLRCRTCCK SRGFQCANHV KSTWVPAARR RERERQQQLA  180
APKEHHHHHQ EQGLQLGGEA PKRPREKHGR PNTSGLELVG NLPADVSSPA VFQCVKVSSV  240
DDNPHEQFAY QTAVNIGGHV FRGILYDHGP DHPTYTNVAT GDDSPGGSGG GNELVQPLDL  300
IAAAATAAAS PVANTASVHV SSTAVPFFDP SSLYPPPLSA YMAGTQFFPH PRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02379.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029723.10.0PREDICTED: protein SHI RELATED SEQUENCE 1
TrEMBLA0A059ASL20.0A0A059ASL2_EUCGR; Uncharacterized protein
STRINGXP_010029723.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34192864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.11e-46Lateral root primordium (LRP) protein-related