PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F01614.1.p | ||||||||
Common Name | EUGRSUZ_F01614 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | SRS | ||||||||
Protein Properties | Length: 241aa MW: 25564.6 Da PI: 7.7967 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 215 | 1.8e-66 | 13 | 169 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrel.....kskkqsal 86 g+++CqdCGnqakkdC+h RCRtCCksrgf+C thvkstWvpaakrrerqq+la+a+ + +++ + ++++ +l +++ + + Eucgr.F01614.1.p 13 GGGINCQDCGNQAKKDCVHLRCRTCCKSRGFECPTHVKSTWVPAAKRRERQQHLATAAVMHHHQQqqplR---QEQPFQLdhyfkRQRDGEVA 102 5789*************************************************99987766555522331...22222223333233333344 PP DUF702 87 sstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ + a+s e+ + lP+e++s+avfrc+rvs++dd +ee+aYqtav+igGhvf+GiLydqG+e+ Eucgr.F01614.1.p 103 AAPPFPIATSGLEVG-QALPPEINSSAVFRCLRVSAMDDTDEEFAYQTAVNIGGHVFRGILYDQGPES 169 444555665554444.44************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.6E-64 | 15 | 168 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.3E-27 | 17 | 59 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 5.4E-25 | 120 | 167 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MMMRHGGEGG GGGGGINCQD CGNQAKKDCV HLRCRTCCKS RGFECPTHVK STWVPAAKRR 60 ERQQHLATAA VMHHHQQQQP LRQEQPFQLD HYFKRQRDGE VAAAPPFPIA TSGLEVGQAL 120 PPEINSSAVF RCLRVSAMDD TDEEFAYQTA VNIGGHVFRG ILYDQGPESR FSSAGESSSG 180 GGGGSHQPLN LITAAPGSTS AAATTAAATG NLATTLLDPS IYATPLNAFM AGTQFFPPPR 240 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F01614.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010061013.1 | 1e-179 | PREDICTED: protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9XGX0 | 1e-72 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | A0A059BQA6 | 1e-178 | A0A059BQA6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010061013.1 | 1e-178 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3419 | 28 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 1e-62 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F01614.1.p |
Publications ? help Back to Top | |||
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