PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g042210.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

SRS

Protein Properties

Length: 338aa MW: 36102.6 Da PI: 8.0615

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g042210.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	236.2	5e-73	117	269	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaes 96 g+ sCqdCGnqakkdC+h+RCRtCCksrg++C+thvkstWvpaakrrerqqqla+ ++ +++s+ e+ +kr+re+ +++ +l +t+++++++ Csa18g042210.1 117 GGPSCQDCGNQAKKDCTHMRCRTCCKSRGLECSTHVKSTWVPAAKRRERQQQLASGQQPQSQSQpqVESVPKRQREHFPSRSDSLVCTRIPTNNT 211 6789*************************************************9999888877688999******************** PP DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ le+ s+P+evss+a+frcvrvssvdd+eee+aY+tavsigGhvfkGiLydqG++e Csa18g042210.1 212 SSGLEIGSFPPEVSSPAIFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGILYDQGPAE 269 *****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.1E-66	118	268	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.8E-27	120	162	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.4E-26	220	267	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MAGFFSLGHG GGRGNSQDHR TNNNPSPSGT ESWLWCRNPN SNANAGGGDV VAPSSYKGTL 60 ELWQHPNNQE IIFQQQQQQR LDLYTSAAGL GVGPSNRNSI ETSGGALMMM RNGSSGGGPS 120 CQDCGNQAKK DCTHMRCRTC CKSRGLECST HVKSTWVPAA KRRERQQQLA SGQQPQSQSQ 180 PQVESVPKRQ REHFPSRSDS LVCTRIPTNN TSSGLEIGSF PPEVSSPAIF RCVRVSSVDD 240 EEEEYAYKTA VSIGGHVFKG ILYDQGPAER SSSGGGSQPL NLITAGPSAS SSSPNVSCNN 300 GVVGSNSDHY IDPASLNYPT PINTFMTGTH FFSNPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g042210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010484658.1	0.0	PREDICTED: protein SHORT INTERNODES
Swissprot	Q9XGX0	0.0	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	R0EWR7	0.0	R0EWR7_9BRAS; Uncharacterized protein
STRING	XP_010484658.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-149	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]