PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp2g30370

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

SRS

Protein Properties

Length: 342aa MW: 36255.8 Da PI: 7.6978

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp2g30370	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	219.8	5.9e-68	128	274	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 sg+ sCqdCGnqakkdCah+RCRtCCksrg++C thvkstWvpaakrre qqql + ++ + e+ +kr+re+ +++++l +t++++++++ le+ Tp2g30370 128 SGGPSCQDCGNQAKKDCAHMRCRTCCKSRGLECPTHVKSTWVPAAKRRECQQQLGSGQQPQ----GESVPKRQREQFPARSTSLVCTRIPTHNTS-GLEI 222 68889***********************************************9987766....67899*****************9876.99 PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++P+evss+a frcvrvssv+dge+e+aY+tavsigGh+fkGiLydqG++e Tp2g30370 223 GNFPAEVSSAANFRCVRVSSVEDGEDEYAYKTAVSIGGHIFKGILYDQGPAE 274 *************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.9E-61	130	273	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.1E-27	132	174	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.0E-27	225	272	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MAGFFSLGNG GGGADGGGSS HDEHHHHNRP NTNNNNPSPS GTESWLWCRN PNPNANAGGG 60 DLAPSYKGTL ELWQHPSNQE MLFQQQQQRL DLYTSAAGLG VGPSHRSLIE ASGGGPAGLM 120 MMRSTGGSGG PSCQDCGNQA KKDCAHMRCR TCCKSRGLEC PTHVKSTWVP AAKRRECQQQ 180 LGSGQQPQGE SVPKRQREQF PARSTSLVCT RIPTHNTSGL EIGNFPAEVS SAANFRCVRV 240 SSVEDGEDEY AYKTAVSIGG HIFKGILYDQ GPAERSSSWG GSQPLNLITA GPSASSSSPN 300 MSCNNGVVGS TSDHYVDPAS VNYPTPVNSF MTGTHFFSNP RS

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MAGFFSLGNG GGGADGGGSS HDEHHHHNRP NTNNNNPSPS GTESWLWCRN PNPNANAGGG  60
DLAPSYKGTL ELWQHPSNQE MLFQQQQQRL DLYTSAAGLG VGPSHRSLIE ASGGGPAGLM  120
MMRSTGGSGG PSCQDCGNQA KKDCAHMRCR TCCKSRGLEC PTHVKSTWVP AAKRRECQQQ  180
LGSGQQPQGE SVPKRQREQF PARSTSLVCT RIPTHNTSGL EIGNFPAEVS SAANFRCVRV  240
SSVEDGEDEY AYKTAVSIGG HIFKGILYDQ GPAERSSSWG GSQPLNLITA GPSASSSSPN  300
MSCNNGVVGS TSDHYVDPAS VNYPTPVNSF MTGTHFFSNP RS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp2g30370

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM222925	0.0	HM222925.1 Thellungiella parvula folic acid transporter gene, complete cds; glutaredoxin gene, complete sequence; kinesin motor family protein, NAC105, zinc finger CCCH-type protein, phosphatidic acid phosphatase, pentatricopeptide repeat protein, GTP binding protein, GAMMA CA3/carbonate dehydratase, and pentatricopeptide repeat genes, complete cds; and unknown genes.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006393825.1	0.0	protein SHORT INTERNODES
Swissprot	Q9XGX0	0.0	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	E5F721	0.0	E5F721_9BRAS; Uncharacterized protein
STRING	XP_006393825.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-149	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Oh DH, et al. Genome structures and halophyte-specific gene expression of the extremophile Thellungiella parvula in comparison with Thellungiella salsuginea (Thellungiella halophila) and Arabidopsis. Plant Physiol., 2010. 154(3): p. 1040-52 [PMID:20833729] Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]