PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM1124
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Subtree rooted at node 172: /----- Gorai.013G039800.1 [Gossypium raimondii] (3) /-100+ | \----- Cotton_A_19408_BGI-A2_v1.0 [Gossypium arboreum] (19) /-100+ | \---------- Gh_D13G0362 [Gossypium hirsutum] (4) /-100+ | \--------------- Gh_A13G0323 [Gossypium hirsutum] (35) /-99-+ | \-------------------- Cotton_A_19409_BGI-A2_v1.0 [Gossypium arboreum] (69) /-100+ | \------------------------- Gorai.013G040000.1 [Gossypium raimondii] (8) | | /---------- Gh_D01G0054 [Gossypium hirsutum] (5) | | | | /----- Cotton_A_00210_BGI-A2_v1.0 [Gossypium arboreum] (78) |--------100--------+-96-+ | | \----- Gh_A01G0054 [Gossypium hirsutum] (88) | | | \---------- Gorai.002G006500.1 [Gossypium raimondii] (82) | /--87-+ /----- Gh_A03G1696 [Gossypium hirsutum] (17) | | /-100+ | | | \----- Cotton_A_00771_BGI-A2_v1.0 [Gossypium arboreum] (32) | |--------100--------+ | | | /----- Gh_D02G2117 [Gossypium hirsutum] (33) | | \-100+ | | \----- Gorai.005G240900.1 [Gossypium raimondii] (51) | | /-63-+ | /----- Cotton_A_32643_BGI-A2_v1.0 [Gossypium arboreum] (22) | | | /-98-+ | | | | \----- Gh_A04G1445 [Gossypium hirsutum] (49) | | \--------100--------+ | | | /----- Gorai.012G150900.1 [Gossypium raimondii] (26) /-100+ | \-100+ | | | \----- Gh_D04G1599 [Gossypium hirsutum] (86) | | | | | \------------------------------------ Thecc1EG006971t2 [Theobroma cacao] (43) | | | \----------------------------------------- Thecc1EG037983t1 [Theobroma cacao] (31) | | /----- Cotton_A_32642_BGI-A2_v1.0 [Gossypium arboreum] (15) | /-100+ | | \----- Gh_A04G1446 [Gossypium hirsutum] (57) | /-100+ | | | /----- Gorai.012G151000.1 [Gossypium raimondii] (92) | | \-100+ | | \----- Gh_D04G1600 [Gossypium hirsutum] (96) | | | /-80-+ /----- Gorai.013G039700.1 [Gossypium raimondii] (39) | | | | | | | /-58-+----- Gh_D13G0361 [Gossypium hirsutum] (47) | | | | | | | \-100+ \----- Gh_A13G0322 [Gossypium hirsutum] (91) | /-100+ | | | | \---------- Cotton_A_19407_BGI-A2_v1.0 [Gossypium arboreum] (99) | | | | | | /----- Thecc1EG006968t1 [Theobroma cacao] (40) | | \------100-----+ /-97-+ | \----- Thecc1EG006969t1 [Theobroma cacao] (59) | | | | | | /----- orange1.1g017237m [Citrus sinensis] (16) | | /-99-+ /-100+ | | | | | \----- Ciclev10028501m [Citrus clementina] (81) | | | | /-100+ | | | | | | /----- Ciclev10028984m [Citrus clementina] (36) | | | | | \-100+ | | | | /-91-+ \----- orange1.1g041048m [Citrus sinensis] (73) | | | | | | | | /--96-+ \-82-+ \--------------- Eucgr.H02901.1.p [Eucalyptus grandis] (54) | | | | | | | | | \-------------------- evm.model.supercontig_62.78 [Carica papaya] (21) | | | | | | | | /----- Neem_11775_f_3 [Azadirachta indica] (18) | | | | /-100+ | | | | | \----- Neem_24270_f_3 [Azadirachta indica] (93) /-95-+ | | \---------95--------+ | | | /-94-+ | /----- Neem_7709_f_2 [Azadirachta indica] (44) | | | | | \-100+ | | | | | \----- Neem_26861_f_1 [Azadirachta indica] (95) | | | | | | | | | | /----- EcS662948.10 [Eucalyptus camaldulensis] (45) | | | | | /-51-+ | | | | | | \----- Eucgr.G01517.1.p [Eucalyptus grandis] (65) | | \-93-+ | | | | | \-----------100-----------+---------- EcS783656.10 [Eucalyptus camaldulensis] (53) /-95-+ | | | | | | | \---------- EcS632340.10 [Eucalyptus camaldulensis] (98) | | | | | | | | /----- Ciclev10028642m [Citrus clementina] (58) | | | \----------------100----------------+ | | | \----- orange1.1g016655m [Citrus sinensis] (61) | | | | | \--------------------------------------------------- evm.model.supercontig_62.76 [Carica papaya] (68) | | | | /----- XP_010519311.1 [Tarenaya hassleriana] (14) | \------------------------99------------------------+ | \----- XP_010532431.1 [Tarenaya hassleriana] (70) | | /----- Cagra.4084s0003.1.p [Capsella grandiflora] (6) | /---100---+ | | \----- Carubv10010224m [Capsella rubella] (46) | | | /-100+ /----- Csa14g055690.1 [Camelina sativa] (29) | | | /-100+ | | | | \----- Csa03g055350.1 [Camelina sativa] (85) | /-100+ \-98-+ | | | \---------- Csa17g083190.1 [Camelina sativa] (48) | | | | /-58-+ \-------------------- Bostr.26675s0223.1.p [Boechera stricta] (55) | | | | | | /----- Araha.9032s0004.1.p [Arabidopsis halleri] (41) | /----100---+ \---------53--------+ --95-+ | | \----- 891847 [Arabidopsis lyrata] (67) | | | | | \------------------------------ AT1G49480.1 [Arabidopsis thaliana] (100) | | | | /----- XP_009107297.1 [Brassica rapa] (7) | | /-99-+ | | | \----- GSBRNA2T00091101001 [Brassica napus] (60) | | /-61-+ | | | | /----- GSBRNA2T00073552001 [Brassica napus] (9) | | | \-100+ | | /-100+ \----- XP_013604041.1 [Brassica oleracea] (75) | | | | | | | | /----- Rsa1.0_03884.1_g00004.1 [Raphanus sativus] (62) | | /-81-+ \---100---+ | | | | \----- RrC19093_p1 [Raphanus raphanistrum] (66) | /-100+ | | | | | | \-------------------- 676782660 [Sisymbrium irio] (52) | | | | | | | | /---------- XP_013638010.1 [Brassica oleracea] (10) | | | | | | | | /-100+ |---------- GSBRNA2T00025755001 [Brassica napus] (37) | | | | | /-99-+ | | | | | | | /----- GSBRNA2T00042915001 [Brassica napus] (89) | | | | | | \-100+ | | | | | /-100+ \----- XP_009144977.1 [Brassica rapa] (120) | | | | | | | \------100-----+ | /-100-+ | | | /----- RrC8235_p2 [Raphanus raphanistrum] (24) | | | | \-100+ \---100---+ | | | | | \----- Rsa1.0_18666.1_g00001.1 [Raphanus sativus] (56) | | | | | | \-99-+ | \-------------------- Tp1g36320 [Thellungiella parvula] (84) | | | | | \------------------------------ Thhalv10012062m [Eutrema salsugineum] (77) | | | \------------------------------------ KFK36008.1 [Arabis alpina] (28) | \---------------------------------------------- AA2G00082 [Aethionema arabicum] (83) Root part of tree: /------------------------------------------------------------------ RrC1952_p2 [Raphanus raphanistrum] (1) | | /---------------- XP_013587606.1 [Brassica oleracea] (42) | | | | /-------- XP_009145836.1 [Brassica rapa] (71) |-----------------------100-----------------------+--100--+ | | \-------- GSBRNA2T00154017001 [Brassica napus] (80) | | | \---------------- GSBRNA2T00107563001 [Brassica napus] (90) | | /----------------------------------------- Tp3g17090 [Thellungiella parvula] (2) | | | | /-------- (172) | | /---61--+ | | | \-------- Csa15g026650.1 [Camelina sativa] (76) | /---57--+ /---61---+ | | | | \---------------- Csa19g026440.1 [Camelina sativa] (50) | | | /---61--+ + | | | | /-------- Carubv10015637m [Capsella rubella] (20) | | | | \-------100------+ | | \---61--+ \-------- Cagra.5105s0003.1.p [Capsella grandiflora] (72) | | | | | \--------------------------------- Bostr.19424s0762.1.p [Boechera stricta] (25) | | | /---98---+ /-------- KFK39227.1 [Arabis alpina] (12) | | |-------------------98-------------------+ | | | \-------- Thhalv10021075m [Eutrema salsugineum] (27) | | | | | |------------------------------------------------- AT3G18990.1 [Arabidopsis thaliana] (38) | | | | | |------------------------------------------------- Araha.3451s0002.1.p [Arabidopsis halleri] (63) | | | | | \------------------------------------------------- 479415 [Arabidopsis lyrata] (74) | | | | /-------- GSBRNA2T00021429001 [Brassica napus] (11) \--100--+ /--100--+ | | \-------- XP_013622602.1 [Brassica oleracea] (110) | /---100--+ | | | /-------- GSBRNA2T00137434001 [Brassica napus] (13) | | \--100--+ | /--100--+ \-------- XP_009135606.1 [Brassica rapa] (130) | | | | | | /-------- Rsa1.0_06088.1_g00002.1 [Raphanus sativus] (23) | | \-------100------+ | | \-------- RrC111_p2 [Raphanus raphanistrum] (87) | | \-----------100----------+ /-------- XP_009112206.1 [Brassica rapa] (30) | /--100--+ | | \-------- GSBRNA2T00005597001 [Brassica napus] (94) | /---100--+ | | | /-------- GSBRNA2T00101258001 [Brassica napus] (64) | | \---99--+ \--100--+ \-------- XP_013604063.1 [Brassica oleracea] (97) | | /-------- Rsa1.0_09250.1_g00001.1 [Raphanus sativus] (34) \-------100------+ \-------- RrC50_p6 [Raphanus raphanistrum] (79) |