PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS662948.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 228aa MW: 26137.3 Da PI: 9.8814 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43 | 8.2e-14 | 2 | 73 | 18 | 93 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +p +f++++ + s tl+ ++g +W v + rk+ ++ ++ +GW+eFv+ + g f+vF+++g ++f+ + EcS662948.10 2 IPENFVKKFRDE--LSSVATLNVPDGHVWHVGI--RKSESKLWFHEGWQEFVQHYSIGIGYFLVFRYEGGTTFQVF 73 9*****999644..6679999************..********************************997777544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-17 | 1 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.47E-16 | 1 | 76 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.3E-18 | 1 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.592 | 1 | 78 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-11 | 2 | 73 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
RIPENFVKKF RDELSSVATL NVPDGHVWHV GIRKSESKLW FHEGWQEFVQ HYSIGIGYFL 60 VFRYEGGTTF QVFIYNLTTS EINYHSNGRV PSEMPHHSRQ YHVFKDMEDD DAVDISSSST 120 YYPSGDSLKR KAVNSSVDQL TLSRGYNSMH LQNLFNGTVH QQKGGANSHA GMRPIEDIVI 180 QAGGIKFKSE DEVKVQSTDQ STRKIKKSSK KKRKNDPSKL SKLKFLNY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010066068.1 | 1e-160 | PREDICTED: B3 domain-containing transcription factor VRN1 | ||||
Swissprot | Q8L3W1 | 1e-46 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A059BCJ5 | 1e-160 | A0A059BCJ5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010066068.1 | 1e-159 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1124 | 28 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-46 | B3 family protein |
Publications ? help Back to Top | |||
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