PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G240900.1 | ||||||||
Common Name | B456_005G240900, LOC105795280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 350aa MW: 40441.2 Da PI: 9.2327 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.6 | 3.4e-16 | 5 | 96 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ff +l+ s +l+ + l++p +f++++ + s+ l+ ++g +W+v + +k +++ ++++GW+eFv+ +++g f++F+++g+s f Gorai.005G240900.1 5 FFHKLILSTTLQDKKLRIPDNFIKKFRDE--LSVAAALTVPDGHVWRVGI--KKVDNKAWFKEGWQEFVERYYIRVGYFLIFRYEGNSAF--S 91 788999999**************999755..999****************..99999*****************************9999..9 PP EEEE- CS B3 94 vkvfr 98 v++f+ Gorai.005G240900.1 92 VSIFD 96 98886 PP | |||||||
2 | B3 | 62.6 | 6.5e-20 | 247 | 337 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 vl ps+ + ++++lp fae+h +g++ ++l+ ++gr+W v++ yr+++ +++GW eF +n+L egD++vF+l +++ef l+ Gorai.005G240900.1 247 VLRPSYLYRGCIMYLPSCFAEQHlSGVSG---FIKLQLPDGRQWPVRCLYRGGR--AKFSQGWYEFTLENNLGEGDVCVFELLRSREFVLK 332 78899******************866743...5***************666665..5699**********************999****** PP EEEE- CS B3 94 vkvfr 98 v+vfr Gorai.005G240900.1 333 VTVFR 337 ***98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.4E-22 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-21 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.17E-17 | 5 | 96 | No hit | No description |
Pfam | PF02362 | 6.1E-13 | 5 | 96 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.507 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-13 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-25 | 236 | 337 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-25 | 237 | 337 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.85E-23 | 242 | 337 | No hit | No description |
SMART | SM01019 | 1.0E-22 | 244 | 339 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.648 | 244 | 339 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-18 | 247 | 337 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MPRPFFHKLI LSTTLQDKKL RIPDNFIKKF RDELSVAAAL TVPDGHVWRV GIKKVDNKAW 60 FKEGWQEFVE RYYIRVGYFL IFRYEGNSAF SVSIFDLYNS EINYQTNALV GTQYNLGRQY 120 PFEELEDDEC VSPAMPNLFG RSKLNCINWS GEVNHHAPKG VNNQPIRVKL HSSGAELPKL 180 KKPGRKKQKF QPSEEDSSLG HEDDMEMRNR FYESASARKR IVTAEERERA INAAKAFEPT 240 NPFCRVVLRP SYLYRGCIMY LPSCFAEQHL SGVSGFIKLQ LPDGRQWPVR CLYRGGRAKF 300 SQGWYEFTLE NNLGEGDVCV FELLRSREFV LKVTVFRVME SAGLMDRSQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-76 | 210 | 340 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-76 | 210 | 340 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480289.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
Swissprot | Q8L3W1 | 1e-153 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A0D2RSI2 | 0.0 | A0A0D2RSI2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G240900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1124 | 28 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-148 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G240900.1 |
Entrez Gene | 105795280 |
Publications ? help Back to Top | |||
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