PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02901.1.p
Common NameEUGRSUZ_H02901
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 344aa    MW: 39682.5 Da    PI: 8.6071
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02901.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-17271071197
                       HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         +++l +pkkfa+++g +   s  ++l  +++  W v+l  rk+++r +l +GW++F + + + +g f++Fk++g+s+f  +v v+
  Eucgr.H02901.1.p  27 IHEKQLGIPKKFARKYGDE--LSDVVRLVASDSSIWLVEL--RKHGSRLWLHDGWQRFLEHHSIHSGHFLIFKYEGDSTF--HVYVY 107
                       45678***********866..8889***************..**********************************9999..66665 PP
2B367.91.4e-21236330199
                       EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                       f+ ++ ps+v ++ ++ lp +f+  h +g    s+++tl+ ++g++W+v++   +++g+  ++kGW+eFv +n+L+ gD+++F+l +r++  l
  Eucgr.H02901.1.p 236 FQVIMRPSYVREKFLVNLPASFIGMHlKG---DSRDITLQVSDGKKWRVRCLLFNGKGK--ISKGWREFVADNKLEIGDVCIFELLQREDIVL 323
                       88999******************999544...4679***************98888888..89************************9***9* PP

                       EEEEE-S CS
                B3  93 vvkvfrk 99 
                       +v++fr 
  Eucgr.H02901.1.p 324 KVTIFRV 330
                       ****995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100179.31E-1716108No hitNo description
SuperFamilySSF1019362.16E-2116108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-2117108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.08517110IPR003340B3 DNA binding domain
SMARTSM010192.5E-1418110IPR003340B3 DNA binding domain
PfamPF023628.9E-1525106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-26228329IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-25229330IPR015300DNA-binding pseudobarrel domain
CDDcd100179.39E-23234329No hitNo description
SMARTSM010193.2E-19236331IPR003340B3 DNA binding domain
PROSITE profilePS5086315.538236331IPR003340B3 DNA binding domain
PfamPF023621.2E-19236329IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSQEEERVAA NGRRACIFYR LMVDSLIHEK QLGIPKKFAR KYGDELSDVV RLVASDSSIW  60
LVELRKHGSR LWLHDGWQRF LEHHSIHSGH FLIFKYEGDS TFHVYVYNLT ASWERNSHNP  120
LGSKEFISSR QFPMHTKKNQ DTDSVVEIRD LCCACPICSC LKDKCFQECR GWRTTDRIHD  180
GVNIIRPEPV ADWEVFHQDK GASYGKSSRE CNAAIIEARG MAIRAAHTYE PNNPFFQVIM  240
RPSYVREKFL VNLPASFIGM HLKGDSRDIT LQVSDGKKWR VRCLLFNGKG KISKGWREFV  300
ADNKLEIGDV CIFELLQRED IVLKVTIFRV PEIGQKYIAT LTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-3220433217144B3 domain-containing transcription factor VRN1
4i1k_B4e-3220433217144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02901.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A059B1Q40.0A0A059B1Q4_EUCGR; Uncharacterized protein
STRINGXP_010026781.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-62B3 family protein