PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010519311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | B3 | ||||||||
Protein Properties | Length: 338aa MW: 38908.2 Da PI: 8.9099 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.7 | 3.8e-17 | 5 | 95 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ff +l+ s++ ++rl++p kf+++++ + s+ + l+ ++g +W+v l rk ++++++++GW eFv+ ++ g ++F+++g+s f v +f XP_010519311.1 5 FFHKLILSSTIHESRLRVPDKFVSKFKDE--LSVAVALTVPDGHVWRVGL--RKADNKIWFQDGWLEFVERYSIRIGYLLIFRYEGNSAF--SVYIF 95 7889999999*************999755..99*****************..**********************************9999..77777 PP | |||||||
2 | B3 | 53.8 | 3.4e-17 | 241 | 334 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f vl ps+ + ++++lp fae++ +g++ + ++ ++ ++W v++ k gr +++GW eF +n+L egD+++F+l ++++f l+v XP_010519311.1 241 FRVVLRPSYLYRGCIMYLPSGFAEKYlSGIS-GF--IK-LQLAEKQWPVRC--LYKAGRAKFSQGWYEFTLENNLGEGDVCIFELLRTRDFVLKV 329 677899********************84443.43..44.34677*******..666666779************************99******* PP EEE-S CS B3 95 kvfrk 99 ++fr XP_010519311.1 330 TAFRV 334 99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-22 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-22 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.69E-19 | 5 | 96 | No hit | No description |
PROSITE profile | PS50863 | 14.184 | 5 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-14 | 5 | 95 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-17 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-22 | 233 | 334 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-21 | 237 | 335 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.17E-20 | 239 | 333 | No hit | No description |
Pfam | PF02362 | 1.4E-15 | 241 | 334 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.76 | 241 | 335 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-21 | 241 | 335 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MPRPFFHKLI LSSTIHESRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW 60 FQDGWLEFVE RYSIRIGYLL IFRYEGNSAF SVYIFNLPSH FEINHHSSGG ALINMDSHNH 120 FKHARLFEDL EDEDAEVMYP SSVYPMLDSV PANKGYGGST IQSLFSGTRA EETPKVLKKR 180 GRKKKNPDPE EINSAAPHED DSENRSKFYE SASARKRTVT AEERERAVNA AKTFEPADPF 240 FRVVLRPSYL YRGCIMYLPS GFAEKYLSGI SGFIKLQLAE KQWPVRCLYK AGRAKFSQGW 300 YEFTLENNLG EGDVCIFELL RTRDFVLKVT AFRVNEYA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 7e-90 | 207 | 338 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 7e-90 | 207 | 338 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010519311.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010519311.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
Refseq | XP_010519312.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
Refseq | XP_010519313.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
Swissprot | Q8L3W1 | 0.0 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | E4MXM2 | 0.0 | E4MXM2_EUTHA; mRNA, clone: RTFL01-34-E14 | ||||
TrEMBL | V4M6R9 | 0.0 | V4M6R9_EUTSA; Uncharacterized protein | ||||
STRING | XP_010519311.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1124 | 28 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 0.0 | B3 family protein |
Publications ? help Back to Top | |||
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