PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G040000.1 | ||||||||
Common Name | B456_013G040000, LOC105782416 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 352aa MW: 40263.9 Da PI: 9.6727 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50 | 5.5e-16 | 5 | 95 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ff +l+ s +l+++ l++p +f++++ + s+ l+ ++g +W+v + +k ++++++++GW+eF + +++g ++vF+++g+s f Gorai.013G040000.1 5 FFHKLILSTTLQEKKLRIPDNFVKKFRDE--LSVAAALTVPDGHVWRVGI--KKVDNKVWFQEGWQEFLERYYIRVGYVLVFRYEGNSAF--S 91 788999999**************999755..999****************..**********************************9999..8 PP EEEE CS B3 94 vkvf 97 v++f Gorai.013G040000.1 92 VSIF 95 8887 PP | |||||||
2 | B3 | 65.5 | 8e-21 | 249 | 339 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 vl ps+ + ++++lp fae+h +g++ + ++l+ ++gr+W+v++ y++++ +++GW eF +n+L egD++vF+l +++ef l+ Gorai.013G040000.1 249 VLRPSYLYRGCIMYLPSCFAEKHlSGVS-G--SIKLQLPDGRQWSVRCLYKGGK--AKFSQGWYEFTLENNLGEGDVCVFELLRSREFVLK 334 78899******************86663.3..59999***********555555..6699**********************999****** PP EEEE- CS B3 94 vkvfr 98 v+vfr Gorai.013G040000.1 335 VTVFR 339 ***98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.81E-21 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-21 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.48E-17 | 5 | 96 | No hit | No description |
Pfam | PF02362 | 7.4E-13 | 5 | 95 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.521 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-12 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.2E-25 | 238 | 339 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.63E-24 | 239 | 339 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.99E-23 | 244 | 339 | No hit | No description |
PROSITE profile | PS50863 | 13.958 | 246 | 341 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-23 | 246 | 341 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-18 | 249 | 339 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MPRPFFHKLI LSTTLQEKKL RIPDNFVKKF RDELSVAAAL TVPDGHVWRV GIKKVDNKVW 60 FQEGWQEFLE RYYIRVGYVL VFRYEGNSAF SVSIFNLYNS EINYQTNALV GTQYNHGKQY 120 PFEQLEDDEC ISPALQNLFG GSKLNNCINW GGDANLQTSK GVNNQPIRVK LHTSGSGAMK 180 PEPKKRGRKR KFDPNVQDSS AGREDDVDMR FRCYESASAR KRTVTAEERE RAINAAKAFE 240 PTNPFCRVVL RPSYLYRGCI MYLPSCFAEK HLSGVSGSIK LQLPDGRQWS VRCLYKGGKA 300 KFSQGWYEFT LENNLGEGDV CVFELLRSRE FVLKVTVFRV MESGGLMHRS Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 5e-74 | 214 | 342 | 17 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 5e-74 | 214 | 342 | 17 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.3149 | 0.0 | flower|seedling| flowering |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX587993 | 1e-58 | JX587993.1 Gossypium hirsutum clone NBRI_GE22287 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012462594.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
Refseq | XP_016745120.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
Swissprot | Q8L3W1 | 1e-156 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A0D2TUM1 | 0.0 | A0A0D2TUM1_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8P1X6 | 0.0 | A0A1U8P1X6_GOSHI; B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
STRING | Gorai.013G040000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1124 | 28 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-154 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G040000.1 |
Entrez Gene | 105782416 |
Publications ? help Back to Top | |||
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