PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_26861_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 333aa    MW: 38237.9 Da    PI: 8.9874
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_26861_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.7e-1712103199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv + s++l+ + l++p kf++++gg+   s   tl  ++g +W+v l  +k ++++++ ++W eFvk + +  g f+vFk++++s+f  +v 
  Neem_26861_f_1  12 FFKVIL-SSTLEDKKLRIPAKFVKKFGGE--LSAVATLSVPNGCVWRVGL--KKDGRKIWFHENWDEFVKYHSIGFGYFLVFKYVKNSTF--HVL 99 
                     666664.66666777***********988..8999***************..999999***************************99999..*** PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f++
  Neem_26861_f_1 100 IFDT 103
                     *997 PP
2B341.42.6e-13244330997
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     ++ + +r++ p  f  ++ + + +   ++l++  gr+  +k+ +rk+s++  + l+kGW eF k n++++gD+++F+l++r++  l+v+vf
  Neem_26861_f_1 244 NSRNYNRVYAPAAFG-KYVNRSVQ--FVKLQNACGRERLIKI-HRKSSNSdgFHLRKGWGEFSKNNNIQAGDICIFELIRRENVLLKVSVF 330
                     555667888888888.56433334..699************9.555555556****************************98888999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-248106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-2410106IPR015300DNA-binding pseudobarrel domain
CDDcd100173.22E-2111102No hitNo description
PROSITE profilePS5086312.53411104IPR003340B3 DNA binding domain
PfamPF023624.2E-1512103IPR003340B3 DNA binding domain
SMARTSM010192.9E-1712104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-13231330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-13232328IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-11235330No hitNo description
PROSITE profilePS5086311.265236333IPR003340B3 DNA binding domain
SMARTSM010193.8E-4237333IPR003340B3 DNA binding domain
PfamPF023623.5E-11243330IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSNPLVHTSS HFFKVILSST LEDKKLRIPA KFVKKFGGEL SAVATLSVPN GCVWRVGLKK  60
DGRKIWFHEN WDEFVKYHSI GFGYFLVFKY VKNSTFHVLI FDTTACQIDY PSNQNDKQNS  120
AQQDEMENEK SVEILDSTAT HKRPISPVKK REPEGKECKM EETEEMDELN GVNDDDDDEL  180
VALLEEKGIC ITGRHYLCSS EERERAIEIA RLVKPKHPSF MIILGLARLV KPKHPSFMII  240
LGSNSRNYNR VYAPAAFGKY VNRSVQFVKL QNACGRERLI KIHRKSSNSD GFHLRKGWGE  300
FSKNNNIQAG DICIFELIRR ENVLLKVSVF HQL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.18e-33B3 family protein