PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS783656.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 132aa MW: 15139.5 Da PI: 8.738 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.9 | 3e-21 | 29 | 119 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 vl ps+ + ++++lp fae+h +g++ ++l++++g++W v++ yr+++ l++GW +F +n+L+egD++vF+l++ +e l v+vfr EcS783656.10 29 VLRPSYLYRGCIMYLPSCFAEKHlNGVSG---FIKLQSTDGKQWPVRCLYRGGR--AKLSQGWYDFSLENNLEEGDVCVFELMRAREVVLQVTVFR 119 7889*******************877744...5***************665555..66*************************9988889999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-26 | 17 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.8E-27 | 19 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.85E-25 | 24 | 119 | No hit | No description |
PROSITE profile | PS50863 | 14.24 | 26 | 121 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-20 | 26 | 121 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.6E-19 | 29 | 119 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0034613 | Biological Process | cellular protein localization | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
KRLVTAEERE KAINAAKMFE PPNPFCRVVL RPSYLYRGCI MYLPSCFAEK HLNGVSGFIK 60 LQSTDGKQWP VRCLYRGGRA KLSQGWYDFS LENNLEEGDV CVFELMRARE VVLQVTVFRV 120 VEEGGLLSHH GR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-66 | 1 | 122 | 24 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-66 | 1 | 122 | 24 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. | |||||
UniProt | Involved in the regulation of vernalization (By similarity). Binds to DNA in vitro in a non-sequence-specific manner. XLG2 promotes the DNA binding activity of RTV1 specifically to promoter regions of FT and SOC1 in vivo and thus leads to the activation of floral integrator genes. {ECO:0000250, ECO:0000269|PubMed:22232549}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00192 | DAP | Transfer from AT1G49480 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold. {ECO:0000269|PubMed:22232549}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010066068.1 | 1e-93 | PREDICTED: B3 domain-containing transcription factor VRN1 | ||||
Swissprot | Q8L3W1 | 5e-64 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
Swissprot | Q9XIB5 | 6e-65 | REM19_ARATH; B3 domain-containing protein REM19 | ||||
TrEMBL | A0A088AWV0 | 3e-77 | A0A088AWV0_SOYBN; Reduced vernalization response 1 | ||||
STRING | XP_010066068.1 | 4e-93 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1124 | 28 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 2e-67 | related to vernalization1 1 |
Publications ? help Back to Top | |||
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