PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g026650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 342aa MW: 39253.6 Da PI: 9.4956 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.6 | 4.5e-18 | 5 | 95 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ff +l+ s++ +++rl++p kf+++++ + s+ + l+ ++g +W+v l rk ++++++++GW+eFv+ ++ g ++F+++g+s f v +f Csa15g026650.1 5 FFHKLIFSSTIQEKRLRVPDKFVSKFKDE--LSVAVALTVPDGHVWRVGL--RKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAF--SVYIF 95 899999*****************999755..99*****************..**********************************9999..88777 PP | |||||||
2 | B3 | 55.1 | 1.3e-17 | 244 | 337 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f vl ps+ + ++++lp fae++ +g++ + ++++ + ++W v++ k gr +++GW eF +n+L egD++vF+l ++++f l+v Csa15g026650.1 244 FRVVLRPSYLYRGCIMYLPSGFAEKYlSGIS-GFIKVQ---LAEKQWPVRC--LYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKV 332 677899********************84442.444555...567*******..666666779************************99******* PP EEE-S CS B3 95 kvfrk 99 ++fr Csa15g026650.1 333 TAFRV 337 99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.1E-22 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.6E-23 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.43E-19 | 5 | 96 | No hit | No description |
PROSITE profile | PS50863 | 14.663 | 5 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-15 | 5 | 96 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-17 | 5 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-23 | 236 | 336 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-22 | 237 | 338 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.15E-20 | 242 | 336 | No hit | No description |
PROSITE profile | PS50863 | 12.619 | 244 | 338 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-16 | 244 | 337 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.5E-22 | 244 | 338 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW 60 FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS EINYHSTGLM DSAHNHFKRA 120 RLFEDLEDED AEVIYPSSLY PSTVPESTVP ANKGYTSSAI QSLFTGSVKA EESMATPKVP 180 KKRGRKKKNA DPEEINSSAP RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT 240 NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS 300 QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVSEY V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 7e-94 | 207 | 341 | 12 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 7e-94 | 207 | 341 | 12 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g026650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF289052 | 0.0 | AF289052.1 Arabidopsis thaliana reduced vernalization response 1 (VRN1) mRNA, VRN1-Ler allele, complete cds. | |||
GenBank | AK230388 | 0.0 | AK230388.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-06-L05. | |||
GenBank | BT024731 | 0.0 | BT024731.1 Arabidopsis thaliana At3g18990 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010466027.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
Swissprot | Q8L3W1 | 0.0 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | R0I355 | 0.0 | R0I355_9BRAS; Uncharacterized protein | ||||
STRING | XP_010466027.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1124 | 28 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 0.0 | B3 family protein |
Publications ? help Back to Top | |||
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