PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG037983t1 | ||||||||
Common Name | TCM_037983 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 92aa MW: 10458.2 Da PI: 8.6492 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.2 | 1.1e-16 | 1 | 79 | 16 | 98 |
EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++lp ae+h +g++ ++l+ ++g++W v++ yr+++ ++++W eF +n+L egD++vF+l +++ef l+v+vfr Thecc1EG037983t1 1 MYLPSCLAEKHlSGVSG---FIKLQLPDGKQWPVRCLYRGGR--AKFSQCWYEFTLENNLGEGDVCVFELLRSREFVLKVTVFR 79 67999999999866643...59**************666665..5699**********************999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.647 | 1 | 81 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.7E-9 | 1 | 81 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.90E-17 | 1 | 79 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.5E-19 | 1 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.0E-15 | 1 | 79 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.62E-19 | 1 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MYLPSCLAEK HLSGVSGFIK LQLPDGKQWP VRCLYRGGRA KFSQCWYEFT LENNLGEGDV 60 CVFELLRSRE FVLKVTVFRV LESAGLMNRP Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-43 | 1 | 82 | 64 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-43 | 1 | 82 | 64 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007042309.1 | 7e-58 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X3 | ||||
Refseq | XP_017971809.1 | 7e-58 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X4 | ||||
Refseq | XP_021287066.1 | 1e-57 | LOW QUALITY PROTEIN: B3 domain-containing transcription factor VRN1-like | ||||
Swissprot | Q8L3W1 | 6e-43 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A061GN34 | 5e-61 | A0A061GN34_THECC; DNA binding protein, putative | ||||
STRING | EOY30946 | 8e-62 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1124 | 28 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-45 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG037983t1 |
Entrez Gene | 18588690 |
Publications ? help Back to Top | |||
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