PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01517.1.p
Common NameEUGRSUZ_G01517
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 382aa    MW: 43724.4 Da    PI: 9.2781
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01517.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.44.1e-16892492
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                B3  4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                      +l+ s++ + +rl++p +f++++  +   s   tl+ ++g +W v +  rk+ ++ ++ +GW+eFv+   +  g f+vF+++g ++f+ 
  Eucgr.G01517.1.p  8 KLVLSSTIQDKRLRIPENFVKKFRDE--LSSVATLNVPDGHVWHVGI--RKSESKLWFHEGWQEFVQHYSIGIGYFLVFRYEGGTTFQV 92
                      56668999999*********999744..667999*************..********************************98777744 PP
2B354.71.8e-172903681698
                       EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +lp  fae+h +g++     ++l++++g++W v++ yr+++    l++GW +F  +n+L+egD++vF+l++ +e  l v+vfr
  Eucgr.G01517.1.p 290 RYLPSCFAEKHlNGVSG---FIKLQSTDGKQWPVRCLYRGGR--AKLSQGWYDFSLENNLEEGDVCVFELMRAREVVLQVTVFR 368
                       589********877743...5***************665555..66*************************9988889999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.75E-21396IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-22396IPR015300DNA-binding pseudobarrel domain
CDDcd100172.67E-19496No hitNo description
PROSITE profilePS5086313.578598IPR003340B3 DNA binding domain
SMARTSM010192.5E-11698IPR003340B3 DNA binding domain
PfamPF023625.3E-14993IPR003340B3 DNA binding domain
SMARTSM010199.5E-13278370IPR003340B3 DNA binding domain
CDDcd100171.19E-18288368No hitNo description
SuperFamilySSF1019361.44E-20289368IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-15290368IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-20291368IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.028292370IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MPRPYFYKLV LSSTIQDKRL RIPENFVKKF RDELSSVATL NVPDGHVWHV GIRKSESKLW  60
FHEGWQEFVQ HYSIGIGYFL VFRYEGGTTF QVFIYNLTTS EINYHSNGRV PSEMPHHSRQ  120
YHVFKDMEDD DAVDISSSST YYPSGDSLKR KAVNSSVDQL TLSRGYNSMH LQNLFNGTVH  180
QQKGGANSHA GMRPIEDIVI QAGGIKFKSE DEVKVQSTDQ STRKIKKSSK KKRKNDPNEP  240
MPSALQEEDG EMRFRFYASA STRKRLVTAE EREKAINAAK MFEPPNPFCR YLPSCFAEKH  300
LNGVSGFIKL QSTDGKQWPV RCLYRGGRAK LSQGWYDFSL ENNLEEGDVC VFELMRAREV  360
VLQVTVFRVV EEGGLLSHHG R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-5325537115144B3 domain-containing transcription factor VRN1
4i1k_B6e-5325537115144B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01517.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066068.10.0PREDICTED: B3 domain-containing transcription factor VRN1
SwissprotQ8L3W11e-124VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A059BCA80.0A0A059BCA8_EUCGR; Uncharacterized protein
STRINGXP_010066068.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-120B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]