PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G151000.1
Common NameB456_012G151000, LOC105779535
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 366aa    MW: 42078.1 Da    PI: 6.7749
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G151000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.54.4e-1723107795
                         .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          ++ l+ + l++p+kf++++g +   s   tl+ + gr+W v+l  r  ++r++l +GW+ Fv+   ++ g fvvFk++g+s f  +v 
  Gorai.012G151000.1  23 VASILQDKKLRIPNKFVKKFGDE--LSSVATLTVPGGRQWLVEL--REEDKRIWLDNGWNTFVEYYSICIGYFVVFKYEGNSHFGVHVY 107
                         556677788********999855..7779***************..**********************************999977665 PP
2B361.91e-19271362499
                         E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         +l ps+v k  +l lp+ fa+++ +g+      ++l+ ++g++W v++ y++      ++kGW eFv +n+L+egD+++F+l++++e  l+
  Gorai.012G151000.1 271 ILRPSYVYKGVLLHLPRCFARRYlNGVD---GVIMLQIPEGKKWPVQCVYCNDN--LKFSKGWAEFVLDNNLDEGDVCIFELINTKEIVLK 356
                         5789*******************85552...2699999**********776666..679************************999999** PP

                         EEEE-S CS
                  B3  94 vkvfrk 99 
                         v++fr+
  Gorai.012G151000.1 357 VTIFRA 362
                         **9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-2112109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-2216109IPR015300DNA-binding pseudobarrel domain
CDDcd100172.25E-1517108No hitNo description
PROSITE profilePS5086313.43717110IPR003340B3 DNA binding domain
SMARTSM010191.3E-1418112IPR003340B3 DNA binding domain
PfamPF023621.8E-1324107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-25259362IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-25261361IPR015300DNA-binding pseudobarrel domain
CDDcd100176.79E-22266361No hitNo description
SMARTSM010194.7E-18267363IPR003340B3 DNA binding domain
PROSITE profilePS5086314.395268363IPR003340B3 DNA binding domain
PfamPF023623.0E-18271362IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSQPVGPSLP LNNSSCIFYK LIVASILQDK KLRIPNKFVK KFGDELSSVA TLTVPGGRQW  60
LVELREEDKR IWLDNGWNTF VEYYSICIGY FVVFKYEGNS HFGVHVYNLK SSEINYLSNN  120
SREPGDFAEI TGSSSYFLVD KDVDESLDHE KKKYKISTGL HQENELRDLR ATFQSTLDKG  180
IQFNGVELMS IGDEGGPCFS NETLRYTIKQ EVEPSMDEQE PFRKFKVKEE LPTLDSPRVL  240
RRRRDVTTEE KQGAFHAASM FKPDNPFCRI ILRPSYVYKG VLLHLPRCFA RRYLNGVDGV  300
IMLQIPEGKK WPVQCVYCND NLKFSKGWAE FVLDNNLDEG DVCIFELINT KEIVLKVTIF  360
RALRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-4424236123141B3 domain-containing transcription factor VRN1
4i1k_B3e-4424236123141B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458783.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0D2S3H70.0A0A0D2S3H7_GOSRA; Uncharacterized protein
STRINGGorai.012G151000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-84B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]