PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_11775_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 357aa MW: 41247.5 Da PI: 9.6303 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.7 | 1.9e-17 | 21 | 111 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk+ ++s +++ l++p kf++ +g++ s tl ++g +W+v l +k ++ +++ +GW Fv+ + + +g f+vFk+ ++s+f +v Neem_11775_f_3 21 FFKIVLTSTLEEKK-LRIPQKFVRMFGHE--LSNAATLIVPNGSRWSVDL--KKDGKNVWFCDGWHAFVQTHSISAGYFLVFKYGKNSRF--LVL 108 88999888888887.********999955..8899***************..999999**************************998999..999 PP EE- CS B3 96 vfr 98 +f+ Neem_11775_f_3 109 IFD 111 997 PP | |||||||
2 | B3 | 46.4 | 7.2e-15 | 262 | 353 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +l p + ++ +++p +fa+++ + + ++++ ++ +++++++ +++ g+++l+kGW++ ++++Lk+gD+++F+l+++++ l+++ Neem_11775_f_3 262 VILQPRSKYCRD-VYVPSTFAQKFitK--DIK--SIKVQVSDEAEYSLQIC-WRQHGGFFLSKGWSHISQDKKLKVGDICIFELVRKKDILLKLR 350 555555555666.99******999543..334..58888888999999996.66667899************************99888878888 PP EE- CS B3 96 vfr 98 vf+ Neem_11775_f_3 351 VFD 353 776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-25 | 16 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.35E-24 | 17 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.53E-20 | 19 | 111 | No hit | No description |
PROSITE profile | PS50863 | 13.902 | 20 | 113 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.5E-16 | 21 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-14 | 21 | 111 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-16 | 252 | 351 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.04E-16 | 253 | 350 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.56E-12 | 258 | 353 | No hit | No description |
PROSITE profile | PS50863 | 9.728 | 259 | 355 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.3E-6 | 260 | 353 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-12 | 267 | 353 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MASSRGVRPI LANSLAEPPH FFKIVLTSTL EEKKLRIPQK FVRMFGHELS NAATLIVPNG 60 SRWSVDLKKD GKNVWFCDGW HAFVQTHSIS AGYFLVFKYG KNSRFLVLIF DLTACEIDYL 120 CNDKESKNNK QNSEFLVDMD SDKDCVQISE GQFHKMYSPT TQHNQAKPTF STWGIKRNPQ 180 SPVSLEKSKV KRRCGQQRRK NIAQEFVEIN EPNDDQKYDL RDSLAEMGIC ITEKYKLLSE 240 ENSKRLLNIA TSLKPKNPSF IVILQPRSKY CRDVYVPSTF AQKFITKDIK SIKVQVSDEA 300 EYSLQICWRQ HGGFFLSKGW SHISQDKKLK VGDICIFELV RKKDILLKLR VFDELVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 7e-16 | 236 | 352 | 25 | 140 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 7e-16 | 236 | 352 | 25 | 140 | B3 domain-containing transcription factor VRN1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024954857.1 | 1e-105 | B3 domain-containing protein At4g01580-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1124 | 28 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-54 | B3 family protein |