PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006969t1 | ||||||||
Common Name | TCM_006969 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 150aa MW: 17232.7 Da PI: 6.7788 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.1 | 3.9e-19 | 60 | 138 | 16 | 98 |
EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p+ fa++h +g+ + t+tl+ ++g++W v++iy +g+ + kGW eFv +n+L+egD++vF+l +++e l+v++fr Thecc1EG006969t1 60 HHIPRWFARKHlNGV--N-GTITLQVSEGKKWPVRCIYV--DGHLKFCKGWAEFVLDNNLDEGDVCVFELLNTEEIVLKVTIFR 138 37*********8666..2.38***************664..44466889********************999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-6 | 1 | 38 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-6 | 1 | 42 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.951 | 1 | 40 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-24 | 43 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.549 | 45 | 140 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-14 | 46 | 140 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-23 | 54 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.3E-18 | 60 | 138 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.43E-19 | 62 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MWFDSGWNVF VEHYSICVGY SLVLRYEGNS HSNVHVHNLA ICVMYFLVFR YNGNSHCNVH 60 HIPRWFARKH LNGVNGTITL QVSEGKKWPV RCIYVDGHLK FCKGWAEFVL DNNLDEGDVC 120 VFELLNTEEI VLKVTIFRVL EDAGSVNQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 6e-29 | 59 | 141 | 63 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 6e-29 | 59 | 141 | 63 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. | |||||
UniProt | Involved in the regulation of vernalization (By similarity). Binds to DNA in vitro in a non-sequence-specific manner. XLG2 promotes the DNA binding activity of RTV1 specifically to promoter regions of FT and SOC1 in vivo and thus leads to the activation of floral integrator genes. {ECO:0000250, ECO:0000269|PubMed:22232549}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold. {ECO:0000269|PubMed:22232549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017970119.1 | 2e-55 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2 | ||||
Swissprot | Q8L3W1 | 1e-26 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
Swissprot | Q9XIB5 | 3e-27 | REM19_ARATH; B3 domain-containing protein REM19 | ||||
TrEMBL | A0A061E7A5 | 1e-105 | A0A061E7A5_THECC; Uncharacterized protein | ||||
STRING | EOX98138 | 1e-106 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1124 | 28 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 1e-29 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006969t1 |
Entrez Gene | 18607856 |
Publications ? help Back to Top | |||
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