PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010532431.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 334aa    MW: 38603.9 Da    PI: 9.3852
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010532431.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.9e-17595197
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    ff +l+ s++ +++rl++p kf+++++ +   s+ + l+ ++g +W+v l  rk ++++++++GW eFv+   ++ g  ++F+++g+s f   v +f
  XP_010532431.1  5 FFHKLILSSTIQEKRLRVPDKFVSKFKDE--LSVAVALTVPDGHVWRVGL--RKADNKIWFQDGWLEFVERYSIRIGYLLIFRYEGNSAF--SVYIF 95
                    8899999****************999755..99*****************..**********************************9999..88777 PP
2B356.16.5e-18237330199
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f  vl ps+  + ++++lp  fae++ +g+  + ++l+l d   ++W v++    k gr  +++GW eF  +n+L egD++vF+l ++++f l+v
  XP_010532431.1 237 FRVVLRPSYLYRGCIMYLPSGFAEKYlSGI-SGFIKLQLAD---KQWPVRC--LYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKV 325
                     677899********************8444.3656777666...*******..666666779************************99******* PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     ++fr 
  XP_010532431.1 326 TAFRV 330
                     99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-23397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-22397IPR015300DNA-binding pseudobarrel domain
CDDcd100177.71E-19596No hitNo description
PfamPF023622.8E-14596IPR003340B3 DNA binding domain
PROSITE profilePS5086314.325598IPR003340B3 DNA binding domain
SMARTSM010191.1E-16698IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-23229330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-22234331IPR015300DNA-binding pseudobarrel domain
CDDcd100177.94E-21235329No hitNo description
PfamPF023622.4E-16237330IPR003340B3 DNA binding domain
SMARTSM010192.5E-22237331IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943237331IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPRPFFHKLI LSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW  60
FQDGWLEFVE RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS EINYHSGSII NMDSHNHFKR  120
ARLFEDLEDE DAEVMYPSSV YPMADSAPVN KGYASSTIQS LFSGSRAEET SKVPKKRGRK  180
KKNPDPEEIN SAPHEDDSEN RSKFYESASA RKRTVTAEER ERAINAAKTF EPVNPFFRVV  240
LRPSYLYRGC IMYLPSGFAE KYLSGISGFI KLQLADKQWP VRCLYKAGRA KFSQGWYEFT  300
LENNLGEGDV CVFELLRTRD FVLKVTAFRV NEYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-9020333415146B3 domain-containing transcription factor VRN1
4i1k_B1e-9020333415146B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010532431.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532691e-130AK353269.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532431.10.0PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2
SwissprotQ8L3W10.0VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A178VIS10.0A0A178VIS1_ARATH; VRN1
STRINGXP_010532431.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]