PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32642_BGI-A2_v1.0
Common NameF383_17634
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 370aa    MW: 42479.5 Da    PI: 6.8466
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32642_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.7e-15381121795
                                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                          B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                                 ++p+kf++++g++   s   tl+ + g +W v+l  r   +r++l +GW++Fv+   ++ g fvvFk++g+s f  +v 
  Cotton_A_32642_BGI-A2_v1.0  38 RIPNKFVKKFGNE--LSSVATLTVPGGCQWLVEL--REDNKRIWLDNGWNSFVEYYSICIGYFVVFKYEGNSHFGVHVY 112
                                 79*****999855..7779***************..999999****************************999977665 PP
2B361.71.2e-19276367499
                                 E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                          B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                 +l ps+v k  +l lp+ fa+++ +g+      +tl+ ++g++W v++ y++      ++kGW eFv +n+L+egD+++F+l+
  Cotton_A_32642_BGI-A2_v1.0 276 ILRPSYVYKGVLLHLPRCFARRYlNGVD---GVITLQIPEGKKWPVQCVYCNDN--LKFSKGWAEFVLDNNLDEGDVCIFELI 353
                                 5789*******************85552...26***************776666..679************************ PP

                                 SSSEE..EEEEE-S CS
                          B3  86 grsefelvvkvfrk 99 
                                 +++e  l+v++fr+
  Cotton_A_32642_BGI-A2_v1.0 354 NTKEIVLKVTIFRA 367
                                 999999****9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.69E-1816114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-1917114IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.4E-918117IPR003340B3 DNA binding domain
CDDcd100173.67E-1420113No hitNo description
PROSITE profilePS5086311.82922115IPR003340B3 DNA binding domain
PfamPF023621.1E-1138112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-25264367IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-26266366IPR015300DNA-binding pseudobarrel domain
CDDcd100174.21E-23271366No hitNo description
SMARTSM010192.6E-18272368IPR003340B3 DNA binding domain
PROSITE profilePS5086314.48273368IPR003340B3 DNA binding domain
PfamPF023622.1E-18276367IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSQPVGPSLP LNNSSCIFYK LIVASILQDK KLVLYSQRIP NKFVKKFGNE LSSVATLTVP  60
GGCQWLVELR EDNKRIWLDN GWNSFVEYYS ICIGYFVVFK YEGNSHFGVH VYNLKSSEIN  120
YLSNNSREPG DFAEITGSSS YFLVDKDVDE SLDHEKKKYK ISTCLHQENE LHDLRATFQS  180
TQDKGIQFNG VELTSIGDEG GPCFSNETLR YTIKQEVEPI MDENEPFRKF KVKEELPTLN  240
SPSVLRRRRD VTAEEKQGAF HAASMFKPDN PFCRIILRPS YVYKGVLLHL PRCFARRYLN  300
GVDGVITLQI PEGKKWPVQC VYCNDNLKFS KGWAEFVLDN NLDEGDVCIF ELINTKEIVL  360
KVTIFRALRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-4524336619141B3 domain-containing transcription factor VRN1
4i1k_B5e-4524336619141B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016671233.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
RefseqXP_017617322.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0B0ME640.0A0A0B0ME64_GOSAR; B3 domain-containing transcription factor VRN1-like protein
TrEMBLA0A1U8I4T70.0A0A1U8I4T7_GOSHI; B3 domain-containing transcription factor VRN1-like
STRINGGorai.012G151000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-80B3 family protein