PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_7709_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 317aa MW: 36674 Da PI: 8.4568 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.3 | 1.1e-16 | 12 | 103 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffkv ++s ++ l++p kf++++g + s +l+ ++gr+W+v l +k ++++++ ++W+ Fv + ++ g fvvF++ ++s+f v + Neem_7709_f_2 12 FFKVILQSTLEDKK-LMIPEKFVRKFGDE--LSAVAKLRVSNGRVWRVGL--KKDGRKIWFHENWNAFVMYHSICFGHFVVFEYLKHSTF--DVLI 100 78888777777666.***********865..8999***************..999999*************************9998888..9999 PP E-S CS B3 97 frk 99 f++ Neem_7709_f_2 101 FDT 103 886 PP | |||||||
2 | B3 | 50.5 | 3.8e-16 | 232 | 313 | 16 | 98 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l+ p fa+++ + + + +l+d+ gr+W +k+ y++++g+ ++ltk W+eF ng++egD++vF+l++r++ l+v+vf Neem_7709_f_2 232 LYAPAAFANKYVSRSIQ--CARLQDSCGREWPMKI-YWRSGGSagFYLTKRWNEFSVINGIREGDICVFELIRREDVLLKVSVFH 313 67799999999444333..49**************.666666667*****************************99989999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.24E-23 | 7 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-23 | 8 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.65E-18 | 11 | 102 | No hit | No description |
PROSITE profile | PS50863 | 12.534 | 11 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-13 | 12 | 102 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-14 | 12 | 104 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.85E-17 | 212 | 313 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-17 | 212 | 314 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.58E-13 | 216 | 312 | No hit | No description |
PROSITE profile | PS50863 | 12.139 | 217 | 315 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.001 | 218 | 315 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.9E-14 | 231 | 313 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MSKPLGHSSS HFFKVILQST LEDKKLMIPE KFVRKFGDEL SAVAKLRVSN GRVWRVGLKK 60 DGRKIWFHEN WNAFVMYHSI CFGHFVVFEY LKHSTFDVLI FDTTACEIDY PSTHNDKENS 120 GEQDEIKNEN SVQVLGSATA NKKRTSPVKK KVPQSKKCKM EEVEEMDEPD GVNDEDDLVA 180 LLQDKGICIT ERHYLFSTEE RERFIEIARF VKPKNPSFMA IVRPAKPNYY SLYAPAAFAN 240 KYVSRSIQCA RLQDSCGREW PMKIYWRSGG SAGFYLTKRW NEFSVINGIR EGDICVFELI 300 RREDVLLKVS VFHATIE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 5e-17 | 197 | 313 | 28 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 5e-17 | 197 | 313 | 28 | 141 | B3 domain-containing transcription factor VRN1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006479392.1 | 1e-88 | B3 domain-containing transcription factor VRN1-like | ||||
Refseq | XP_024035724.1 | 1e-88 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
Refseq | XP_024035725.1 | 1e-88 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
Refseq | XP_024035726.1 | 1e-88 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
STRING | XP_006479392.1 | 5e-88 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1124 | 28 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 7e-42 | B3 family protein |