PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM530
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Subtree rooted at node 170: /---------- Csa07g052720.1 [Camelina sativa] (2) | |---------- Csa09g086950.1 [Camelina sativa] (17) /-100+ | | /----- Cagra.1080s0003.1.p [Capsella grandiflora] (60) | \-100+ | \----- Carubv10023996m [Capsella rubella] (96) /------100-----+ | | /----- AT2G22630.1 [Arabidopsis thaliana] (9) | | /-100+ | | | \----- 320100 [Arabidopsis lyrata] (30) | \-85-+ | \---------- Bostr.19427s0033.1.p [Boechera stricta] (88) | | /----- XP_013603502.1 [Brassica oleracea] (10) | /-66-+ | | \----- XP_009117344.1 [Brassica rapa] (37) | /-100+ /--51-+ | \---------- RrC17408_p1 [Raphanus raphanistrum] (12) | | /-87-+ | | | \--------------- 676720286 [Sisymbrium irio] (55) | | /-58-+ | | | \-------------------- Thhalv10000598m [Eutrema salsugineum] (50) | | | | | | /---------- XP_009140371.1 [Brassica rapa] (16) | | | | | | | | /----- GSBRNA2T00149769001 [Brassica napus] (26) /-100+ | | |-100+ | | \-55-+------100-----+ \----- XP_013634719.1 [Brassica oleracea] (36) | | | | | | | |---------- GSBRNA2T00032893001 [Brassica napus] (38) | | | | | | | \---------- Rsa1.0_00614.1_g00008.1 [Raphanus sativus] (94) | | | | | \------------------------- Tp4g01670 [Thellungiella parvula] (77) | | | \------------------------------------ KFK34858.1 [Arabis alpina] (81) | | /----- Csa12g003420.1 [Camelina sativa] (5) | /-97-+ | | \----- Csa10g003160.1 [Camelina sativa] (47) | /-73-+ | | \---------- Bostr.25542s0226.1.p [Boechera stricta] (58) | | | /-63-+ /----- Araha.1654s0001.1.p [Arabidopsis halleri] (28) | | | /-100+ | | | | \----- 490820 [Arabidopsis lyrata] (49) | | \-95-+ | /----99---+ \---------- AT4G37940.1 [Arabidopsis thaliana] (66) /-95-+ | | | | | | /----- Cagra.5414s0059.1.p [Capsella grandiflora] (46) | | | \------100-----+ | | | \----- Carubv10006453m [Capsella rubella] (78) | | | | | | /----- GSBRNA2T00121622001 [Brassica napus] (8) | | | /-100+ | | | | \----- XP_009131941.1 [Brassica rapa] (83) | | | /-100+ | | | | | /----- GSBRNA2T00131190001 [Brassica napus] (21) | | /--97-+ | \-100+ | | | | /-100+ \----- XP_013589012.1 [Brassica oleracea] (52) | | | | | | | | | | /-96-+ \--------------- RrC226_p3 [Raphanus raphanistrum] (31) | | | | | | | | | | | \-------------------- 676765800 [Sisymbrium irio] (57) | | | | | /-100+ | | | | /--------------- Tp7g35590 [Thellungiella parvula] (15) | | | | | | | | | | | | | | /----- XP_013627313.1 [Brassica oleracea] (25) | | | | | | | | | | \-100+ \-57-+ | /-100+----- GSBRNA2T00150996001 [Brassica napus] (51) | | | |----57---+ | | | | | | |-98-+ \----- XP_009109406.1 [Brassica rapa] (100) | | | | | | | | | | | \---------- Rsa1.0_05755.1_g00001.1 [Raphanus sativus] (72) | | | | | /-91-+ | | | \--------------- KFK30425.1 [Arabis alpina] (98) | | | | | | | | | \------------------------- Thhalv10026139m [Eutrema salsugineum] (59) | | | | | | | \------------------------------------ AA30G00303 [Aethionema arabicum] (34) | | | | | | /----- XP_010555422.1 [Tarenaya hassleriana] (89) | | \-------------------100------------------+ | | \----- XP_010531345.1 [Tarenaya hassleriana] (140) | | /-86-+ \--------------------------------------------------- XP_010518970.1 [Tarenaya hassleriana] (70) | | | | /----- Gh_D11G0534 [Gossypium hirsutum] (20) | | /----81---+ | | | \----- Gh_A11G0462 [Gossypium hirsutum] (85) | | | | | /-100+ /----- Cotton_A_10847_BGI-A2_v1.0 [Gossypium arboreum] (79) | | | | /-91-+ | | | | | \----- Cotton_A_10849_BGI-A2_v1.0 [Gossypium arboreum] (130) | \----------------100----------------+ \-58-+ | | \---------- Gorai.007G058200.1 [Gossypium raimondii] (95) | | | \-------------------- Thecc1EG000931t1 [Theobroma cacao] (40) | | /-------------------- AT2G14210.1 [Arabidopsis thaliana] (3) | | | | /----- Cagra.3821s0004.1.p [Capsella grandiflora] (32) | | /-100+ | /-100+ | \----- Carubv10015972m [Capsella rubella] (45) | | | /-92-+ | | | | \---------- Bostr.13083s0004.1.p [Boechera stricta] (120) | | \-100+ | | \--------------- Csa01g035280.1 [Camelina sativa] (65) | | | | /----- GSBRNA2T00144676001 [Brassica napus] (11) | /-97-+ /-100+ | | | | \----- XP_013594265.1 [Brassica oleracea] (91) --75-+ | | /-100+ | | | | | /----- XP_009123192.1 [Brassica rapa] (33) | | | | \-82-+ | | | /-91-+ \----- GSBRNA2T00089502001 [Brassica napus] (80) | /-100-+ | | | | | | \-91-+ \--------------- Tp3g27580 [Thellungiella parvula] (99) | | | | | | | \-------------------- 676750776 [Sisymbrium irio] (23) | /-100+ | | | | \------------------------------ AA123G00130 [Aethionema arabicum] (13) | | | | | \------------------------------------ XP_010527021.1 [Tarenaya hassleriana] (68) | | | | /----- Gh_A03G1563 [Gossypium hirsutum] (7) | |----------------100----------------+ | | \----- Gh_D02G2012 [Gossypium hirsutum] (43) | | | /-99-+ /----- Gorai.008G018100.1 [Gossypium raimondii] (18) | | | /-74-+ | | | | \----- Gh_D12G0163 [Gossypium hirsutum] (48) | | | /-100+ | | | | \---------- Gh_A12G0150 [Gossypium hirsutum] (22) | | |------------99-----------+ | | | \--------------- Thecc1EG007324t1 [Theobroma cacao] (71) | | | | | | /----- EcC054745.10 [Eucalyptus camaldulensis] (76) \------100-----+ \-----------------96----------------+ | \----- XP_010520705.1 [Tarenaya hassleriana] (93) | | /----- Gh_D13G0472 [Gossypium hirsutum] (42) | /-100+ | | \----- Gorai.013G053800.1 [Gossypium raimondii] (82) | /-100+ | | \---------- Gh_A13G0423 [Gossypium hirsutum] (44) \--------------100-------------+ | /----- Gh_A13G0425 [Gossypium hirsutum] (61) \---100---+ \----- Gorai.013G054000.1 [Gossypium raimondii] (62) Root part of tree: /------------------------------------------------------------------ Rsa1.0_01468.1_g00007.1 [Raphanus sativus] (1) | |------------------------------------------------------------------ RrC2563_p1 [Raphanus raphanistrum] (4) | | /----- (170) | /------95------+ | | \----- Eucgr.I02593.1.p [Eucalyptus grandis] (64) | | | | /----- Gh_A06G0244 [Gossypium hirsutum] (19) | /-99-+ /-100+ | | | | \----- Gh_D06G0245 [Gossypium hirsutum] (63) | | | /-77-+ | | | | \---------- Thecc1EG034549t1 [Theobroma cacao] (150) | /-100+ \-98-+ | | | \--------------- Gh_Sca004768G07 [Gossypium hirsutum] (110) | | | | /-100-+ \------------------------- XP_010520846.1 [Tarenaya hassleriana] (67) | | | | /-100+ \------------------------------ XP_010520827.1 [Tarenaya hassleriana] (69) | | | | | \------------------------------------ AA817G00001 [Aethionema arabicum] (54) | | | | /----- Carubv10017951m [Capsella rubella] (24) | | /-99-+ + /-63-+ | \----- Cagra.0578s0054.1.p [Capsella grandiflora] (27) | | | /-64-+ | | | | \---------- Csa06g032970.1 [Camelina sativa] (29) | | | /-93-+ | | | | \--------------- Bostr.20505s0022.1.p [Boechera stricta] (87) | | | | | /-100+ \---------100--------+ /----- Araha.3772s0002.1.p [Arabidopsis halleri] (41) | | | | /-97-+ | | | | | \----- 486166 [Arabidopsis lyrata] (53) | | | \---100---+ | /-55-+ | \---------- AT3G57230.1 [Arabidopsis thaliana] (75) | | | | | | | \---------------------------------------------- Thhalv10026116m [Eutrema salsugineum] (56) | | | | | \--------------------------------------------------- Tp7g32000 [Thellungiella parvula] (73) | /-100+ | | | /-------------------- 676780986 [Sisymbrium irio] (6) | | | | | | | | /--------------- Rsa1.0_00344.1_g00022.1 [Raphanus sativus] (14) | | \-----------------99----------------+ | | | | | /----- GSBRNA2T00121299001 [Brassica napus] (74) | | \-100+ /-95-+ | | | | \----- XP_009115272.1 [Brassica rapa] (84) \-100+ \-100+ | | /----- XP_013620707.1 [Brassica oleracea] (86) | \-100+ | \----- GSBRNA2T00130794001 [Brassica napus] (97) | | /----- XP_013595734.1 [Brassica oleracea] (35) | /-100+ | | \----- GSBRNA2T00099980001 [Brassica napus] (39) \------------------------100-----------------------+ | /----- XP_009138271.1 [Brassica rapa] (90) \-100+ \----- GSBRNA2T00092702001 [Brassica napus] (92) |