PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA817G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MIKC_MADS
Protein Properties Length: 290aa    MW: 32947.4 Da    PI: 8.7677
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA817G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF901.2e-2858107251
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                  ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev viifsstg+ly++ss
  AA817G00001  58 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGVIIFSSTGRLYDFSS 107
                  8***********************************************96 PP
2K-box82.69e-28129218998
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  + +++ + +q+e+a Lk+++++Lq+++R+++Ge+L+ L++++Lq+Le+qLe sl+ +R kK+++l+e+i+el +  + +++en +L+kk+
  AA817G00001 129 NPSSEIKFWQKEAAILKRQLHTLQENHRQMMGEELSGLTVEDLQNLENQLEMSLRGVRMKKDQMLVEEIKELNREGNLAHQENIELHKKV 218
                  678899**********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-4049108IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.19849109IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-3350139IPR002100Transcription factor, MADS-box
CDDcd002654.62E-4450122No hitNo description
PRINTSPR004042.8E-285171IPR002100Transcription factor, MADS-box
PROSITE patternPS00350051105IPR002100Transcription factor, MADS-box
PfamPF003191.5E-2558105IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-287186IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-2886107IPR002100Transcription factor, MADS-box
PfamPF014862.0E-25130218IPR002487Transcription factor, K-box
PROSITE profilePS5129715.235134224IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MCGEVLNEKF HEDNVKYIKL MKPGSHGGVR SGLATPCART ANVIADNRMG RGKIAIRRID  60
NSTSRQVTFS KRRNGLLKKA KELSILCDAE VGVIIFSSTG RLYDFSSSSM KSVIDRYNDA  120
KGETNSLTNP SSEIKFWQKE AAILKRQLHT LQENHRQMMG EELSGLTVED LQNLENQLEM  180
SLRGVRMKKD QMLVEEIKEL NREGNLAHQE NIELHKKVYL MQQENMELYK KVSEIEGVKS  240
ANKHSLLTNG LDKRDSSSEP VNLQLSQPEQ SHNEEKQTNA TQLGYFFFIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-2049129181MEF2C
5f28_B8e-2049129181MEF2C
5f28_C8e-2049129181MEF2C
5f28_D8e-2049129181MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA817G00001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001326287.11e-139AGAMOUS-like 16
RefseqNP_191282.21e-139AGAMOUS-like 16
SwissprotA2RVQ51e-140AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBLA0A1J3G5791e-139A0A1J3G579_NOCCA; Agamous-like MADS-box protein AGL16
STRINGAT3G57230.11e-138(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-142AGAMOUS-like 16
Publications ? help Back to Top
  1. Yang K,Jiang M,Le J
    A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell.
    J Integr Plant Biol, 2014. 56(6): p. 539-49
    [PMID:24386951]