PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G018100.1
Common NameB456_008G018100, LOC105762746
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27678.6 Da    PI: 10.087
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G018100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-281059251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +iifsstgkly+y+s
  Gorai.008G018100.1 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIIFSSTGKLYDYAS 59
                        8***********************************************86 PP
2K-box88.71.1e-2981171999
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         + +++ + +q+e+a L+++++ Lq  +R+l+Ge+L+ Ls+k+Lq+Le+qLe slk +R+kK+++l+++i+el +k + +++en +L kk++
  Gorai.008G018100.1  81 NPDSQVKFWQREAASLRQQLQYLQDYHRQLMGEELSGLSVKDLQHLENQLEVSLKGVRTKKEQILTDEIKELNHKGHLIHQENLELYKKVD 171
                         578999*********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.5E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.127161IPR002100Transcription factor, MADS-box
CDDcd002652.97E-46278No hitNo description
SuperFamilySSF554551.57E-33291IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.9E-2783170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.65686176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGLIIFSS TGKLYDYASS  60
SMKSVIERYN KVKEEHHQLL NPDSQVKFWQ REAASLRQQL QYLQDYHRQL MGEELSGLSV  120
KDLQHLENQL EVSLKGVRTK KEQILTDEIK ELNHKGHLIH QENLELYKKV DLIHQQNTEL  180
QKKIYGTREA NEASRISHSN YTFNNGYDLH APVRLQLSQP QPPKNNAPAK SMKLGLQLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-24183183MEF2C
5f28_B6e-24183183MEF2C
5f28_C6e-24183183MEF2C
5f28_D6e-24183183MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556650.0KC155665.1 Gossypium hirsutum MADS box protein MADS70 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436077.11e-176PREDICTED: MADS-box transcription factor 23-like
RefseqXP_012436078.11e-176PREDICTED: MADS-box transcription factor 23-like
RefseqXP_016737536.11e-176PREDICTED: MADS-box transcription factor 23 isoform X1
SwissprotQ6EP491e-106MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0D2R7881e-175A0A0D2R788_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NEV21e-175A0A1U8NEV2_GOSHI; MADS-box transcription factor 23 isoform X1
STRINGGorai.008G018100.11e-176(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-101AGAMOUS-like 21
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]