PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g032970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27439.1 Da PI: 7.394 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.6 | 7.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifsstg+ly++ss Csa06g032970.1 9 KRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 81.9 | 1.5e-27 | 76 | 170 | 4 | 98 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +s+++ +++ + +q+e+a Lk++++nLq+++R+++G++L+ Ls+ +Lq+Le+qLe sl+ +R kK+++l+++i+el + + +++en +L+kk+ Csa06g032970.1 76 TSSENDPASEIQFWQKEAAILKRQLHNLQENHRQMMGQELSGLSVDDLQNLENQLELSLRGVRMKKDQMLIQEIQELNREGNLVHQENLDLHKKV 170 45555678899**********************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.791 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.88E-32 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.70E-44 | 2 | 78 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.6E-25 | 83 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.907 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MGRGKIAIKR INNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGRLYDFSSS 60 SMKSVIERYT DAKGETSSEN DPASEIQFWQ KEAAILKRQL HNLQENHRQM MGQELSGLSV 120 DDLQNLENQL ELSLRGVRMK KDQMLIQEIQ ELNREGNLVH QENLDLHKKV NLMHQQNMEL 180 HEKVSEVEGV KITNKNYLLT NGLDMRDNSS EHVHLQLSQP QHDETHAKAI QLNYFSFIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-20 | 1 | 71 | 1 | 71 | MEF2C |
5f28_B | 2e-20 | 1 | 71 | 1 | 71 | MEF2C |
5f28_C | 2e-20 | 1 | 71 | 1 | 71 | MEF2C |
5f28_D | 2e-20 | 1 | 71 | 1 | 71 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00410 | DAP | Transfer from AT3G57230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g032970.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT030046 | 0.0 | BT030046.1 Arabidopsis thaliana At3g57230 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010516335.1 | 1e-176 | PREDICTED: agamous-like MADS-box protein AGL16 | ||||
Refseq | XP_010516336.1 | 1e-176 | PREDICTED: agamous-like MADS-box protein AGL16 | ||||
Refseq | XP_019102405.1 | 1e-176 | PREDICTED: agamous-like MADS-box protein AGL16 | ||||
Refseq | XP_019102407.1 | 1e-176 | PREDICTED: agamous-like MADS-box protein AGL16 | ||||
Swissprot | A2RVQ5 | 1e-167 | AGL16_ARATH; Agamous-like MADS-box protein AGL16 | ||||
TrEMBL | R0HL77 | 1e-171 | R0HL77_9BRAS; Uncharacterized protein | ||||
STRING | XP_010516335.1 | 1e-175 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM530 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-160 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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