PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10849_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25627.2 Da    PI: 9.8833
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10849_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.21.7e-261059251
                                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                ri+n+  rqvtfskRr+g++KKA+EL +LCdaev ++ifss+gklye++s
  Cotton_A_10849_BGI-A2_v1.0 10 RIDNSASRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSSGKLYEFAS 59
                                8***********************************************86 PP
2K-box82.97.3e-2876170498
                       K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                                 +++ s+ +++ + +q+e+a Lk++++nLq ++R+l+Ge+L  L +++Lq+Le+qLe slk +R kK+++l+++ieel ++   
  Cotton_A_10849_BGI-A2_v1.0  76 HQQLSNPSSEVKFWQREAAILKQQLQNLQDNHRQLMGEQLYGLRVEDLQNLENQLEMSLKGVRMKKERILTNEIEELNRRGSL 158
                                 5555678899************************************************************************* PP

                       K-box  87 lqeenkaLrkkl 98 
                                 +++en +L kk+
  Cotton_A_10849_BGI-A2_v1.0 159 IHQENVELFKKV 170
                                 ********9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.342161IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-38160IPR002100Transcription factor, MADS-box
CDDcd002652.51E-42278No hitNo description
SuperFamilySSF554551.57E-32291IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-2583170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.60386176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRGKIAIRR IDNSASRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS SGKLYEFAST  60
SMKSVIERYN TLKEEHQQLS NPSSEVKFWQ REAAILKQQL QNLQDNHRQL MGEQLYGLRV  120
EDLQNLENQL EMSLKGVRMK KERILTNEIE ELNRRGSLIH QENVELFKKV NLIRKENIEL  180
HKKVYGTRDE NGNAMSSYVF DGGEGSNVPI HLQLSQPERD KD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-23181181MEF2 CHIMERA
6byy_B3e-23181181MEF2 CHIMERA
6byy_C3e-23181181MEF2 CHIMERA
6byy_D3e-23181181MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556330.0KC155633.1 Gossypium hirsutum MADS box protein MADS38 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636789.11e-161PREDICTED: MADS-box transcription factor 23-like
SwissprotQ6EP491e-102MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1U8IXS21e-159A0A1U8IXS2_GOSHI; MADS-box transcription factor 23-like isoform X1
STRINGGorai.007G058200.11e-155(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-102AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]