PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1563
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 27256 Da    PI: 9.6271
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1563genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-281059251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +iifsstgkly+y+s
  Gh_A03G1563 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIIFSSTGKLYDYAS 59
                 8***********************************************86 PP
2K-box86.55.6e-2981171999
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  + +++ + +q+e+a L+++++ Lq+ +R+l+Ge+L+ Ls+++Lq+Le+qLe slk +R kK+++l+++++el +k + +++en +L+kkl+
  Gh_A03G1563  81 NPASEVKFWQREVASLRQQLQYLQEYHRQLMGEELSGLSINDLQNLENQLEMSLKGVRMKKDQILTDEVKELNNKGHLIHQENLELHKKLD 171
                  678899**********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.805161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-40160IPR002100Transcription factor, MADS-box
CDDcd002655.03E-46277No hitNo description
SuperFamilySSF554552.22E-32290IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-293859IPR002100Transcription factor, MADS-box
PfamPF014868.7E-2783170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.61586176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007584Biological Processresponse to nutrient
GO:0048527Biological Processlateral root development
GO:0071249Biological Processcellular response to nitrate
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGKLVIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGLIIFSS TGKLYDYAST  60
SMRSVIERYN RTKEEHHHQM NPASEVKFWQ REVASLRQQL QYLQEYHRQL MGEELSGLSI  120
NDLQNLENQL EMSLKGVRMK KDQILTDEVK ELNNKGHLIH QENLELHKKL DLMCQENTEL  180
QKKVYGTRQA NEASRSSPPN YTFNNGYDLH APVHLQLSQP LPQKNDAPEK PMKLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-23182182MEF2C
5f28_B4e-23182182MEF2C
5f28_C4e-23182182MEF2C
5f28_D4e-23182182MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556500.0KC155650.1 Gossypium hirsutum MADS box protein MADS55 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480080.11e-171PREDICTED: MADS-box transcription factor 23-like isoform X2
SwissprotQ6EP491e-103MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLU5L2X31e-168U5L2X3_GOSHI; MADS box protein MADS55
STRINGGorai.008G018100.11e-146(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.11e-100AGAMOUS-like 44
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]