PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA30G00303
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MIKC_MADS
Protein Properties Length: 188aa    MW: 21976.3 Da    PI: 10.4743
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA30G00303genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.94.1e-261059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri++++ rqvtfskRr+g++KKA+EL +LCdaev ++ifsstgkly+++s
  AA30G00303 10 RIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLLIFSSTGKLYDFAS 59
                8***********************************************86 PP
2K-box83.45.1e-2881171999
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 + +++ + +q+e+a L++e++ Lq+++R+++Ge+L+ L+++eL++Le+qLe sl+ iR kK+++l+++i++l +k + +++en +L++k++
  AA30G00303  81 NPASEVKFWQREAAVLRQELHGLQENHRQMMGEQLSGLNVNELNNLENQLEMSLRGIRMKKEQILTNEIQQLSQKRNHIHQENLELSRKVD 171
                 567889**********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.852161IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-38160IPR002100Transcription factor, MADS-box
CDDcd002652.50E-41278No hitNo description
SuperFamilySSF554554.06E-31282IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-273859IPR002100Transcription factor, MADS-box
PfamPF014869.0E-2684170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.79286176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLLIFSS TGKLYDFASS  60
SMKTVIDRYN KSKIDQQQLL NPASEVKFWQ REAAVLRQEL HGLQENHRQM MGEQLSGLNV  120
NELNNLENQL EMSLRGIRMK KEQILTNEIQ QLSQKRNHIH QENLELSRKV DRIHQVNMEL  180
YKKVFDKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-21169169MEF2C
5f28_B9e-21169169MEF2C
5f28_C9e-21169169MEF2C
5f28_D9e-21169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA30G00303
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005482.11e-120agamous-like MADS-box protein AGL21 isoform X2
SwissprotQ9SZJ61e-119AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A397YCJ71e-117A0A397YCJ7_BRACM; Uncharacterized protein
STRINGXP_010446607.11e-119(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-108AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]