PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G053800.1
Common NameB456_013G053800, LOC105782972
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27658.4 Da    PI: 9.5431
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G053800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.32.6e-25959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+ie +s rqvtfskRrng+lKKA+EL +LCdaev +iifsst kl+ ++s
  Gorai.013G053800.1  9 KKIEKSSSRQVTFSKRRNGLLKKAKELAILCDAEVGLIIFSSTSKLHHFAS 59
                        68**********************************************986 PP
2K-box84.71.9e-28831721099
               K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          +++ + +++e+a L+++++ Lq+ qR+l+G++L+ Ls+k+Lq Le+qLe slk++R +K+++l++qi+el +k +++++en + +kkl+
  Gorai.013G053800.1  83 PASELKFWKKEVASLRQQLNDLQECQRQLMGKELSGLSFKDLQGLENQLEMSLKRVRMRKDQILTNQIDELNRKGHRIHQENLEVHKKLD 172
                         567899********************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.216161IPR002100Transcription factor, MADS-box
CDDcd002651.81E-43277No hitNo description
SuperFamilySSF554552.62E-32279IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2685171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.73187177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGKIEIKK IEKSSSRQVT FSKRRNGLLK KAKELAILCD AEVGLIIFSS TSKLHHFASS  60
SMNSVIERYN KYKEENHHQL LDPASELKFW KKEVASLRQQ LNDLQECQRQ LMGKELSGLS  120
FKDLQGLENQ LEMSLKRVRM RKDQILTNQI DELNRKGHRI HQENLEVHKK LDLICHENTE  180
LQQKVNGNGA EEANEGSKSL SHSYGFNSGY DYLQAPVVDL RLSQPQQLPE ADTSNLKTRS  240
T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-22174174MEF2C
5f28_B4e-22174174MEF2C
5f28_C4e-22174174MEF2C
5f28_D4e-22174174MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463563.11e-178PREDICTED: MADS-box transcription factor 23-like
SwissprotQ6EP491e-80MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0D2TVT51e-176A0A0D2TVT5_GOSRA; Uncharacterized protein
STRINGGorai.013G053800.11e-177(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.17e-76AGAMOUS-like 16
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]