PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026139m
Common NameEUTSA_v10026139mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 27193.9 Da    PI: 9.4949
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026139mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.21.6e-261059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ri++++ rqvtfskRr+g++KKA+EL +LCdaev +iifsstgkly+++s
  Thhalv10026139m 10 RIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFAS 59
                     8***********************************************86 PP
2K-box713.7e-2481176999
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke.....lqeenkaLrkk 97 
                      + +++ + +q+e+a L++e++ Lq+++R+++Ge+L+ Ls++eL++Le+qLe sl+ iR kK+++l+ +i+el +k  +     +++en +L++k
  Thhalv10026139m  81 NPASEVKFWQREAAVLRQELHALQENHRQIMGEQLNGLSVNELNNLENQLELSLRGIRMKKEQMLTHEIQELSQKVTMryrnlIHQENLELSRK 174
                      567889******************************************************************9998653333367888888888 PP

            K-box  98 le 99 
                      ++
  Thhalv10026139m 175 VQ 176
                      75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.02161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.36E-42278No hitNo description
SuperFamilySSF554551.03E-31288IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-273859IPR002100Transcription factor, MADS-box
PfamPF014864.0E-2284175IPR002487Transcription factor, K-box
PROSITE profilePS5129714.71686181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS TGKLYDFASS  60
SMKSVIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL HALQENHRQI MGEQLNGLSV  120
NELNNLENQL ELSLRGIRMK KEQMLTHEIQ ELSQKVTMRY RNLIHQENLE LSRKVQRIHQ  180
ENVELYKKAY TASTNGFIHR ELAVADDESQ YTQIRLQLSQ PEHSDYETPP RASE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-21169169MEF2C
5f28_B4e-21169169MEF2C
5f28_C4e-21169169MEF2C
5f28_D4e-21169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026139m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3369790.0AF336979.1 Arabidopsis thaliana MADS-box protein AGL21 mRNA, complete cds.
GenBankBT0248460.0BT024846.1 Arabidopsis thaliana At4g37940 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411833.11e-173agamous-like MADS-box protein AGL21 isoform X1
SwissprotQ9SZJ61e-155AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLV4P1R81e-171V4P1R8_EUTSA; Uncharacterized protein
STRINGXP_006411833.11e-172(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-141AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]