PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I02593.1.p | ||||||||
Common Name | EUGRSUZ_I02593 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 211aa MW: 23832.6 Da PI: 5.3685 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.7 | 9.7e-21 | 5 | 51 | 5 | 51 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++s ++tf+kRrn ++KKA+ LS LCdaev +iifs tg+lyeyss Eucgr.I02593.1.p 5 SSSSDHITFAKRRNSLMKKAKDLSQLCDAEVGIIIFSCTGQLYEYSS 51 678889***************************************96 PP | |||||||
2 | K-box | 57.7 | 5.1e-20 | 81 | 143 | 36 | 98 |
K-box 36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +l+GedL+ Ls+k++q+Le+qLe sl++iR +K++++++qi+el +k + +++en +L++k+ Eucgr.I02593.1.p 81 GQLMGEDLSGLSVKDIQNLENQLEMSLSTIRLQKEQIMMDQINELHRKRNLVHQENIELQEKV 143 59**********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.554 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-12 | 4 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.9E-18 | 6 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.59E-22 | 7 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-13 | 15 | 30 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-13 | 30 | 51 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.325 | 47 | 149 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.0E-20 | 80 | 143 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MNPHSSSSDH ITFAKRRNSL MKKAKDLSQL CDAEVGIIIF SCTGQLYEYS SSSMDSVIER 60 YNNLKREAQP ELDQPTVDAK GQLMGEDLSG LSVKDIQNLE NQLEMSLSTI RLQKEQIMMD 120 QINELHRKRN LVHQENIELQ EKVNLIDKEN SEFLECQIHR EGSSSSEANR FHVSYGINTG 180 DDTDIPIPSP SRRPSRRNRS ATPPVTTELA * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I02593.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010029960.1 | 1e-119 | PREDICTED: MADS-box transcription factor 23 isoform X1 | ||||
Refseq | XP_010029961.1 | 1e-119 | PREDICTED: MADS-box transcription factor 23 isoform X1 | ||||
Refseq | XP_010029962.1 | 1e-119 | PREDICTED: MADS-box transcription factor 23 isoform X1 | ||||
Swissprot | Q6EP49 | 8e-52 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A059ATD0 | 1e-153 | A0A059ATD0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010029960.1 | 1e-119 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM530 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.2 | 2e-51 | AGAMOUS-like 16 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I02593.1.p |
Publications ? help Back to Top | |||
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