PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G054000.1 | ||||||||
Common Name | B456_013G054000, LOC105782969 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27865.7 Da PI: 9.4605 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76 | 2.8e-24 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie +s rqvtfskRrng+lKKA+EL +LCdae +iifsst kl+ ++s Gorai.013G054000.1 9 KKIEKSSSRQVTFSKRRNGLLKKAKELAILCDAELGLIIFSSTSKLHHFAS 59 68**********************************************986 PP | |||||||
2 | K-box | 83.2 | 5.9e-28 | 84 | 172 | 11 | 99 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ + +++e+a L+++++ Lq+ +R+l+Ge+L+ Ls+k+L++Le+qLe slk++R +K+++l++qi+el k + +++en +L+kkl+ Gorai.013G054000.1 84 ASELKFWEKEVASLRQQLNDLQEYHRQLMGEELSGLSIKDLRNLENQLEMSLKSVRMRKDQILTNQIKELSLKGHHIHKENLELQKKLD 172 577899********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.782 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.96E-42 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 3.53E-31 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-26 | 85 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.474 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGRGKIEIKK IEKSSSRQVT FSKRRNGLLK KAKELAILCD AELGLIIFSS TSKLHHFASS 60 SMKSVIERYN KYREEYHRQL LDPASELKFW EKEVASLRQQ LNDLQEYHRQ LMGEELSGLS 120 IKDLRNLENQ LEMSLKSVRM RKDQILTNQI KELSLKGHHI HKENLELQKK LDLICQENTE 180 LQRKVDGNGT VEANEGSKSS SHSYGFNNGY DELQAPVVDL RLSQPQQLPD ADTSYRNLRL 240 L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-21 | 1 | 74 | 1 | 74 | MEF2C |
5f28_B | 2e-21 | 1 | 74 | 1 | 74 | MEF2C |
5f28_C | 2e-21 | 1 | 74 | 1 | 74 | MEF2C |
5f28_D | 2e-21 | 1 | 74 | 1 | 74 | MEF2C |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012463560.1 | 1e-176 | PREDICTED: MADS-box transcription factor 23-like isoform X4 | ||||
Swissprot | Q6EP49 | 7e-82 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A0D2TVT8 | 1e-175 | A0A0D2TVT8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G054000.1 | 1e-175 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM530 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 7e-78 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G054000.1 |
Entrez Gene | 105782969 |
Publications ? help Back to Top | |||
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