PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA123G00130
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MIKC_MADS
Protein Properties Length: 149aa    MW: 17265.9 Da    PI: 9.8978
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA123G00130genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.25e-291867251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 ri+n++ rqvtfskRr g+lKKA+ELS+LCdaev viifsstgkly+yss
  AA123G00130 18 RIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYSS 67
                 8***********************************************96 PP
2K-box62.22.1e-2190148967
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRs 67 
                  +++++ + +q+e+a+L+++++ Lq+ +R+l+Ge+L+ +++++Lq+Le+qLe+slk iR 
  AA123G00130  90 NHASEIKFWQREVANLQQQLQYLQECHRKLIGEELSGMNVNDLQNLEDQLETSLKGIRL 148
                  688999****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.623969IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-39968IPR002100Transcription factor, MADS-box
CDDcd002651.35E-421087No hitNo description
SuperFamilySSF554551.7E-3310100IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001165IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-291131IPR002100Transcription factor, MADS-box
PfamPF003198.5E-261865IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-293146IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-294667IPR002100Transcription factor, MADS-box
PfamPF014861.6E-1691148IPR002487Transcription factor, K-box
PROSITE profilePS5129710.65795149IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007584Biological Processresponse to nutrient
GO:0048527Biological Processlateral root development
GO:0071249Biological Processcellular response to nitrate
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MMKFGVDLMG RGKIVIRRID NSTSRQVTFS KRRSGLLKKA KELSILCDAE VGVIIFSSTG  60
KLYDYSSNSS MKNIIERYNK VKEEQHQLMN HASEIKFWQR EVANLQQQLQ YLQECHRKLI  120
GEELSGMNVN DLQNLEDQLE TSLKGIRLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-20990181MEF2C
5f28_B7e-20990181MEF2C
5f28_C7e-20990181MEF2C
5f28_D7e-20990181MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for root plasticity in response to nitrate, NO(3)(-). Promotes lateral root growth in a NRT1.1-dependent manner. {ECO:0000269|PubMed:15667327, ECO:0000269|PubMed:17148611, ECO:0000269|PubMed:9430595}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA123G00130
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate in root cell culture, (PubMed:9430595, PubMed:17148611). In roots, seems induced by nitrogen (N) deprivation (e.g. nitrate free medium) but rapidly repressed by N re-supply (e.g. nitrate, glutamine and ammonium) (PubMed:16021502). Slight repression in shoots during nitrogen (N) deprivation. {ECO:0000269|PubMed:16021502, ECO:0000269|PubMed:17148611, ECO:0000269|PubMed:9430595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024016512.15e-91MADS-box transcription factor ANR1
SwissprotQ9SI382e-86ANR1_ARATH; MADS-box transcription factor ANR1
TrEMBLA0A1J3D6U47e-90A0A1J3D6U4_NOCCA; MADS-box transcription factor ANR1 (Fragment)
STRINGXP_010527021.14e-89(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.19e-89AGAMOUS-like 44
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Yan Y,Wang H,Hamera S,Chen X,Fang R
    miR444a has multiple functions in the rice nitrate-signaling pathway.
    Plant J., 2014. 78(1): p. 44-55
    [PMID:24460537]
  3. Lei L, et al.
    Nitrogen use efficiency is regulated by interacting proteins relevant to development in wheat.
    Plant Biotechnol. J., 2018. 16(6): p. 1214-1226
    [PMID:29193541]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]