PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G37940.1 | ||||||||
Common Name | AGL21, F20D10.60 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 228aa MW: 26411 Da PI: 9.3404 | ||||||||
Description | AGAMOUS-like 21 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.3 | 1.5e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri++++ rqvtfskRr+g++KKA+EL +LCdaev +iifsstgkly+++s AT4G37940.1 10 RIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 79.7 | 6.9e-27 | 81 | 171 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +++ + +q+e+a L++e++ Lq+++R+++Ge+L+ Ls++eL++Le+q+e sl+ iR +K++ll+++i+el +k + +++en +L++k++ AT4G37940.1 81 NPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKVQ 171 567889***********************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.02 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.33E-43 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 9.81E-32 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.4E-25 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.254 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000016 | anatomy | lateral root primordium | ||||
PO:0000026 | anatomy | primary root tip | ||||
PO:0003021 | anatomy | central root cap of primary root | ||||
PO:0005059 | anatomy | root endodermis | ||||
PO:0006081 | anatomy | primary root apical meristem | ||||
PO:0006307 | anatomy | root procambium | ||||
PO:0009005 | anatomy | root | ||||
PO:0020124 | anatomy | root stele | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS TGKLYDFASS 60 SMKSVIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL HALQENHRQM MGEQLNGLSV 120 NELNSLENQI EISLRGIRMR KEQLLTQEIQ ELSQKRNLIH QENLDLSRKV QRIHQENVEL 180 YKKAYMANTN GFTHREVAVA DDESHTQIRL QLSQPEHSDY DTPPRANE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 3e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 3e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 3e-21 | 1 | 69 | 1 | 69 | MEF2C |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 253014_at | 0.0 | ||||
Expression Atlas | AT4G37940 | - | ||||
AtGenExpress | AT4G37940 | - | ||||
ATTED-II | AT4G37940 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Primarily expressed during lateral root formation and embryogenesis. {ECO:0000269|PubMed:11855641}. | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in root. {ECO:0000269|PubMed:11855641}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a MADS box protein, highly expressed in the root. | |||||
UniProt | Probable transcription factor. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G37940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT4G37940, AT5G13790, AT5G15800, AT5G60910, AT5G62165, AT1G69120, AT1G71692 | |||||
IntAct | Search Q9SZJ6 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G37940 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF336979 | 0.0 | AF336979.1 Arabidopsis thaliana MADS-box protein AGL21 mRNA, complete cds. | |||
GenBank | BT024846 | 0.0 | BT024846.1 Arabidopsis thaliana At4g37940 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_195507.1 | 1e-168 | AGAMOUS-like 21 | ||||
Swissprot | Q9SZJ6 | 1e-169 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | Q29PR0 | 1e-167 | Q29PR0_ARATH; At4g37940 | ||||
STRING | AT4G37940.1 | 1e-167 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM530 | 24 | 105 | Representative plant | OGRP16 | 17 | 761 |
Link Out ? help Back to Top | |
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Phytozome | AT4G37940.1 |
Entrez Gene | 829950 |
iHOP | AT4G37940 |
wikigenes | AT4G37940 |