PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK34858.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 26053.6 Da    PI: 9.7492
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK34858.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.51.2e-251059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri++++ rqvtfskRr+g++KKA+EL +LCdaev +iifs+t+kly+++s
  KFK34858.1 10 RIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSNTDKLYDFAS 59
                8***********************************************86 PP
2K-box73.55.9e-25831691399
       K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  a++ ++e++ L++e+++Lq+++R+l Ge L+ Ls+k+L++Le+qLe sl+ iR kK+++l+++i+el +k + +++en +L++k++
  KFK34858.1  83 PAAEVKREATTLRQELHSLQENHRQLTGEHLNGLSVKDLHNLESQLEMSLRGIRMKKEQILTNEIKELTRKRNLIHQENLELSRKVQ 169
                 467899*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.151161IPR002100Transcription factor, MADS-box
CDDcd002651.57E-38278No hitNo description
SuperFamilySSF554557.85E-30277IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.44984174IPR002487Transcription factor, K-box
PfamPF014864.0E-2485168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048578Biological Processpositive regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKVVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSN TDKLYDFASS  60
SMKSAIERFN KTKMEQQQQL LNPAAEVKRE ATTLRQELHS LQENHRQLTG EHLNGLSVKD  120
LHNLESQLEM SLRGIRMKKE QILTNEIKEL TRKRNLIHQE NLELSRKVQQ IYQENVELHM  180
KAYATSNTNG LRHREIEDAA DESHAQVRLQ LSQPEQSYYE TPTKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19169169MEF2C
5f28_B1e-19169169MEF2C
5f28_C1e-19169169MEF2C
5f28_D1e-19169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK34858.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746936.11e-137agamous-like MADS-box protein AGL17
SwissprotQ388401e-131AGL17_ARATH; Agamous-like MADS-box protein AGL17
TrEMBLA0A087GYA61e-163A0A087GYA6_ARAAL; Uncharacterized protein
STRINGA0A087GYA61e-164(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.11e-133AGAMOUS-like 17
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]