PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM4042
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Subtree rooted at node 92: /----------------------------------------- KFK36932.1 [Arabis alpina] (5) | | /----- XP_009141921.1 [Brassica rapa] (9) | /-83-+ | | \----- GSBRNA2T00155098001 [Brassica napus] (40) | /-87-+ | | \---------- XP_013634112.1 [Brassica oleracea] (29) | /-100-+ | | \--------------- GSBRNA2T00123280001 [Brassica napus] (38) | /-100+ | | | /----- Rsa1.0_02285.1_g00005.1 [Raphanus sativus] (22) | | \-------89------+ | | \----- RrC24660_p1 [Raphanus raphanistrum] (50) /-85-+ | | | | /----- XP_009142704.1 [Brassica rapa] (12) | | /-100+ /-100+ | | | | | \----- GSBRNA2T00132841001 [Brassica napus] (28) | | | | /-100+ | | | | | | /----- GSBRNA2T00024327001 [Brassica napus] (16) | | | | | \-100+ | | | \----100---+ \----- XP_013636912.1 [Brassica oleracea] (42) | | /-87-+ | | | | | | /----- RrC3512_p2 [Raphanus raphanistrum] (30) | | | | \---100---+ | | | | \----- Rsa1.0_00222.1_g00012.1 [Raphanus sativus] (53) | \-53-+ | | | \------------------------------- 676735674 [Sisymbrium irio] (46) /-100-+ | | | | /----- Thhalv10016819m [Eutrema salsugineum] (27) | | \--------------70--------------+ | | \----- Tp4g22950 [Thellungiella parvula] (55) | | | | /----- Araha.8490s0007.1.p [Arabidopsis halleri] (7) | | /-99-+ | | | \----- 483119 [Arabidopsis lyrata] (20) | | /----82----+ | | | \---------- AT2G40620.1 [Arabidopsis thaliana] (57) | | | | | | /----- Csa05g012080.1 [Camelina sativa] (19) /-100+ | | /-91-+ | | \-----------100----------+ | \----- Csa04g054990.1 [Camelina sativa] (39) | | | /-100+ | | | | \---------- Csa06g045050.1 [Camelina sativa] (52) | | | | | | \-100-+ /---------- Bostr.9345s0072.1.p [Boechera stricta] (35) | | | | | | \-56-+ /----- Carubv10025182m [Capsella rubella] (36) /-100+ | \-100+ | | | \----- Cagra.1642s0027.1.p [Capsella grandiflora] (49) | | | | | \---------------------------------------------------- AA93G00066 [Aethionema arabicum] (33) | | | | /----- XP_010554713.1 [Tarenaya hassleriana] (17) | | /-84-+ | | | \----- XP_010539313.1 [Tarenaya hassleriana] (45) --97-+ \----------------------86----------------------+ | \---------- XP_010525409.1 [Tarenaya hassleriana] (37) | | /----- Neem_8966_f_1 [Azadirachta indica] (8) | /-100+ | | \----- Neem_42098_f_1 [Azadirachta indica] (41) | /-98-+ | | \---------- Thecc1EG042286t1 [Theobroma cacao] (21) \----------------------100---------------------+ \--------------- evm.model.supercontig_2.298 [Carica papaya] (18) Root part of tree: /------------------------------------------------------------------- Gh_D06G1934 [Gossypium hirsutum] (1) | | /------- Gh_A06G1580 [Gossypium hirsutum] (10) |----------------------------100----------------------------+ | \------- Cotton_A_15600_BGI-A2_v1.0 [Gossypium arboreum] (44) | | /------------------------------------------------------------ Gorai.010G218700.1 [Gossypium raimondii] (2) | | | | /------- Gh_A10G1607 [Gossypium hirsutum] (3) | | /--100--+ | | | \------- Cotton_A_23834_BGI-A2_v1.0 [Gossypium arboreum] (26) + | /--59--+ | | | \--------------- Gh_D10G1862 [Gossypium hirsutum] (25) | | /------100-----+ | | | \---------------------- Gorai.011G209200.2 [Gossypium raimondii] (43) | | | | | | /------- (92) | | | /---70--+ | | | | \------- evm.model.supercontig_19.62 [Carica papaya] (34) | | | /--76--+ | | | | | /------- Eucgr.G03135.1.p [Eucalyptus grandis] (11) | | /---72--+ | \--100--+ \--89--+ | | | \------- Eucgr.J00119.1.p [Eucalyptus grandis] (47) | | | /--100--+ | | | | | /------- Ciclev10032076m [Citrus clementina] (13) | | | | | /--100--+ | | | | | | \------- orange1.1g020026m [Citrus sinensis] (54) | | | | \--100-+ | | | | | /------- Neem_25179_f_1 [Azadirachta indica] (14) | | \--96--+ \--100--+ | | | \------- Neem_1400_f_2 [Azadirachta indica] (23) | /--99--+ | | | | | /------- Gh_A05G3769 [Gossypium hirsutum] (6) | | | | /---95--+ | | | | | \------- Cotton_A_06019_BGI-A2_v1.0 [Gossypium arboreum] (24) | | | \------100-----+ | | | | /------- Gorai.012G014500.1 [Gossypium raimondii] (15) | | | \---89--+ \--100--+ | \------- Gh_D04G1925 [Gossypium hirsutum] (31) | | | \--------------------------------------------- Thecc1EG045524t1 [Theobroma cacao] (4) | | /------- Cotton_A_04055_BGI-A2_v1.0 [Gossypium arboreum] (32) | /--100--+ | | \------- Gh_A05G2386 [Gossypium hirsutum] (51) \-----------------100----------------+ | /------- Gorai.009G293600.1 [Gossypium raimondii] (48) \--100--+ \------- Gh_D05G2651 [Gossypium hirsutum] (56) |