PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G293600.1

Common Name

B456_009G293600, LOC105770533

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 372aa MW: 40353.8 Da PI: 6.4159

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G293600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	1e-10	170	222	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l + Gorai.009G293600.1 170 KRAKRIIANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT 222 9****************************************999877666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.3E-17	166	230	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.622	168	231	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.8E-9	170	219	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.84E-11	170	221	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.2E-10	170	224	No hit	No description
CDD	cd14703	6.52E-24	171	220	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MGTPKMQDPP SLDPNPDRPF PSNASSSTTQ TTPSFPNPTS FRGSYHRRAH SEVQFRIPDD 60 LDLVSDPFEG LGSEDDLFCT YVDIEKLGGS SKGSEDGGGA AGSSSGGSGR NPEGEEMSGV 120 SGKGEKNNGG GKGRHRYSNS IDGCSLMESI EAKKAMSPDK LAELWTIDPK RAKRIIANRQ 180 SAARSKERKA RYISELERKV QTLQTEATTL SAQLTLFQRD TTGLTTENTE LKLRLQAMEQ 240 QAQLRDALNE ALKKEVERLK SATGEITTST DTFNLGMHRM PYNQSSFFPP QPEHMQVGTP 300 NIQMPPFHPL RSNMLTPNQS VVTSSNSQAF AGIMQQDPLG RLQGLDISSR SSHLVKSESP 360 SISADESSGT L*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MGTPKMQDPP SLDPNPDRPF PSNASSSTTQ TTPSFPNPTS FRGSYHRRAH SEVQFRIPDD  60
LDLVSDPFEG LGSEDDLFCT YVDIEKLGGS SKGSEDGGGA AGSSSGGSGR NPEGEEMSGV  120
SGKGEKNNGG GKGRHRYSNS IDGCSLMESI EAKKAMSPDK LAELWTIDPK RAKRIIANRQ  180
SAARSKERKA RYISELERKV QTLQTEATTL SAQLTLFQRD TTGLTTENTE LKLRLQAMEQ  240
QAQLRDALNE ALKKEVERLK SATGEITTST DTFNLGMHRM PYNQSSFFPP QPEHMQVGTP  300
NIQMPPFHPL RSNMLTPNQS VVTSSNSQAF AGIMQQDPLG RLQGLDISSR SSHLVKSESP  360
SISADESSGT L*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447231.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	1e-113	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A0D2SAA3	0.0	A0A0D2SAA3_GOSRA; Uncharacterized protein
STRING	Gorai.009G293600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-108	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G293600.1
Entrez Gene	105770533

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]