PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC24660_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 221aa MW: 25397.8 Da PI: 7.5886 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.4 | 3.7e-09 | 2 | 52 | 12 | 62 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 12 kNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 NR +A rs +RK +i eLe+kv++L++e ++L +l+ + l se RrC24660_p1 2 ANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLSLFQRDTTGLSSE 52 6**********************************9999887776666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50217 | 9.438 | 1 | 56 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 3.4E-7 | 1 | 55 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 3.61E-17 | 1 | 45 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.2E-9 | 2 | 50 | No hit | No description |
SuperFamily | SSF57959 | 1.27E-8 | 2 | 46 | No hit | No description |
Pfam | PF00170 | 2.5E-7 | 2 | 53 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MANRQSAARS KERKARYIME LERKVQSLQT EATTLSAQLS LFQRDTTGLS SENTELKLRL 60 QVMEQQAKLR DALNDQLKKE VERLKFATGE VSHADAYNLG MAHMQYSQQQ QQQPQQQQQQ 120 QSFFQHHHHH HQQQQQQTDA QNIQQMTHQF HLFQPNNNHN QNQNPQLMHH ATSNASGQSH 180 SFAEAMHEDH LGRLQGLDIS SCGRGSNFGR SDTVSESSST M |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY074269 | 1e-111 | AY074269.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds. | |||
GenBank | AY096746 | 1e-111 | AY096746.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds. | |||
GenBank | Z86093 | 1e-111 | Z86093.1 A.thaliana mRNA for b-Zip DNA binding protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_181594.1 | 1e-119 | Basic-leucine zipper (bZIP) transcription factor family protein | ||||
Swissprot | O22873 | 1e-120 | BZP18_ARATH; bZIP transcription factor 18 | ||||
TrEMBL | A0A178VZR1 | 1e-117 | A0A178VZR1_ARATH; Uncharacterized protein | ||||
STRING | AT2G40620.1 | 1e-118 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4042 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 7e-63 | bZIP family protein |
Publications ? help Back to Top | |||
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