PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_06019_BGI-A2_v1.0 | ||||||||
Common Name | F383_34591 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 212aa MW: 23470.7 Da PI: 7.6731 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.1 | 1.2e-10 | 24 | 74 | 5 | 55 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 kr++r + NR +A+rs ++K ++ eLe+kv++L++e ++L l + Cotton_A_06019_BGI-A2_v1.0 24 KRAKRIIANRRSATRSKEKKALYMSELERKVQTLQTEATTLSAHLTLFQRD 74 9****************************************9888766655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.0E-14 | 20 | 84 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.002 | 22 | 85 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.79E-10 | 24 | 78 | No hit | No description |
Pfam | PF00170 | 4.5E-9 | 24 | 71 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.9E-10 | 24 | 78 | No hit | No description |
CDD | cd14703 | 3.53E-20 | 25 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MESIEAKKAM APDKLAELWT IDPKRAKRII ANRRSATRSK EKKALYMSEL ERKVQTLQTE 60 ATTLSAHLTL FQRDTTGLTT ENAELKLRLQ AMEQQAQLCD ALNEALKKEV ERLKTATGEI 120 TTPTDTFNLG MHHISYAQSS FFPPQNTQLP PFHPFHSNLL TSASNTNSHA LADMMQQDPL 180 GLLQGLDTSS RGLPFVKSES PSICAAESSG TV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017613054.1 | 1e-153 | PREDICTED: transcription factor RF2b-like | ||||
Swissprot | Q6S4P4 | 4e-76 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A0B0N4B9 | 1e-152 | A0A0B0N4B9_GOSAR; Transcription factor RF2b | ||||
STRING | Gorai.012G014500.1 | 1e-148 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4042 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06850.1 | 2e-70 | basic leucine-zipper 52 |
Publications ? help Back to Top | |||
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