PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_42098_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | bZIP | ||||||||
Protein Properties | Length: 237aa MW: 26210.6 Da PI: 9.4568 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.5 | 7.7e-10 | 15 | 60 | 5 | 50 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr++r NR +A rs +RK ++ eLe+kv++L++e ++L +l Neem_42098_f_1 15 KRAKRILANRQSAARSKERKARYMLELERKVQTLQTEATTLSAQLT 60 9****************************************98775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.4E-16 | 11 | 75 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.565 | 13 | 76 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.48E-10 | 15 | 66 | No hit | No description |
Pfam | PF00170 | 2.5E-8 | 15 | 60 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.5E-10 | 15 | 69 | No hit | No description |
CDD | cd14703 | 3.98E-21 | 16 | 65 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MPPDKLAELW MVDPKRAKRI LANRQSAARS KERKARYMLE LERKVQTLQT EATTLSAQLT 60 LFQRDTTGLS AENTELKLRL QAMEQQAQLR DALNEALKKE VERLKIATGE IVNPSESFNM 120 GIHPMPYNHS NVFAVLQQSF NMGIHPMPYN HSNVFAVLQQ PAGAPTGHQN MQLSALSHSQ 180 SSTAAHHLQQ TSSQPASDVS KNDEVGRLQG LDISSKVSSF VKSEGPSLSA SESSTTF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010108472.1 | 1e-113 | transcription factor RF2b | ||||
Swissprot | O22873 | 2e-71 | BZP18_ARATH; bZIP transcription factor 18 | ||||
TrEMBL | W9SAC2 | 1e-111 | W9SAC2_9ROSA; Transcription factor RF2b | ||||
STRING | XP_010108472.1 | 1e-112 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4042 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06850.1 | 8e-72 | basic leucine-zipper 52 |
Publications ? help Back to Top | |||
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