PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G2386

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 328aa MW: 35643.3 Da PI: 5.8402

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G2386	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.6	1.5e-09	131	179	9	57
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 r + NR +A rs +RK +i eLe+kv++L++e ++L +l + Gh_A05G2386 131 RIIANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT 179 6678*********************************999877666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.9E-14	123	187	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.542	127	188	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.15E-10	129	178	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.2E-10	129	181	No hit	No description
Pfam	PF00170	6.5E-8	130	176	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.18E-22	131	177	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MQDPPSLDPN PDPPFPSNAS SSAAQTTPSF PHPTSFRGSY HRRVHSEVQF RIPDDLDLVS 60 DPFEGLGSED DLFCTYVDIE KLGGSSKGSE DGGGAAGSSS GGSGRNPEGE EMSGLSGKGE 120 KNNGGGKGRH RIIANRQSAA RSKERKARYI SELERKVQTL QTEATTLSAQ LTLFQRDTTG 180 LTTENTELKL RLQAMEQQAQ LRDALNEALK KEVERLKIAT GEITTPTDTF NLGMHHMPYN 240 QSSFFPPQPE HMQVDTQNIQ MPSFHPLRSN MLTPNQSVVT SSNSQAFADI MRQDPLGRLQ 300 GLDISSRSSH LVKSESPSIS AGESSGTL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.15442	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016686327.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	8e-89	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A1U8J7K9	0.0	A0A1U8J7K9_GOSHI; transcription factor RF2b-like
STRING	Gorai.009G293600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	7e-65	basic leucine-zipper 52

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]