PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_8966_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 330aa MW: 36249.4 Da PI: 6.3575

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_8966_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.6	1.5e-09	130	178	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK ++ eLe+kv++L++e ++L +l + Neem_8966_f_1 130 KRAKRILANRQSAARSKERKARYMLELERKVQTLQTEATTLSAQLTLFQ 178 9****************************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.4E-16	126	190	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.565	128	191	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.4E-8	130	176	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.6E-7	130	184	No hit	No description
SuperFamily	SSF57959	2.53E-10	130	181	No hit	No description
CDD	cd14703	3.17E-21	131	180	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MEIQDPQPQS KPKLESYPNP SLSSTNVAAS PSSLSSAFIR NESHHRRAHS EMNFRLRDDM 60 TTGTMMTTDP MGGGSSTTSL EEIGSEDDLF STYIDVDKHS NSVDGYGEVL EAKKAMPPDK 120 LAELWMVDPK RAKRILANRQ SAARSKERKA RYMLELERKV QTLQTEATTL SAQLTLFQRD 180 TTGLSAENTE LKLRLQAMEQ QAQLRDALNE ALKKEVERLK IATGEIVNPS ESFNMGIHPM 240 PYNHSNVFAV LQQPAGAPTG HQNMQLSALS HSQSSTAAHH LQQTSSQPAS DVSKNDEVGR 300 LQGLDISSKV SSFVKSEGPS LSASESSTTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017429100.1	1e-146	PREDICTED: transcription factor RF2b-like
Refseq	XP_022731010.1	1e-146	transcription factor RF2b-like
Swissprot	O22873	1e-90	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A0L9UWB3	1e-144	A0A0L9UWB3_PHAAN; Uncharacterized protein
STRING	XP_007142045.1	1e-143	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	6e-86	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]