PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g22950

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bZIP

Protein Properties

Length: 371aa MW: 41000.2 Da PI: 6.6809

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g22950	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	149	206	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l+ + l se Tp4g22950 149 KRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQRDTTGLSSE 206 9*****************************************9999887776666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-16	145	209	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.53	147	210	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.97E-10	149	200	No hit	No description
Pfam	PF00170	1.8E-9	149	207	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.7E-10	149	204	No hit	No description
CDD	cd14703	6.83E-22	150	199	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MEDHSNMKSN QCPPLANPAP APAPFRGPYH RRAHSEVQFR LPEDLDLSEP FGGFDELGSE 60 DDLFCSYMDI EKLGTGSGSA SDSAGPSAPR SDNPFSAENG GGGRDEAGNS RPRHRHSLSV 120 DGSSTLESIE AKKAMAPDKL AELWVVDPKR AKRIIANRQS AARSKERKAR YILELERKVQ 180 TLQTEATTLS AQLSLFQRDT TGLSSENTDL KLRLQVMEQQ AKLRDALNDQ LKKEVERLKF 240 ATGEVSPADA YNLGMAHMQY SQQQPKQSFF QHHQQQTDAQ NLQQMTHQFH LFQPNNNQNP 300 NMTSSASRQN PPTAHQLMHH ATSNASGQSH SFSEAMHEDP LGRLQGLDIS SCGRGSNFGR 360 SDTVSESSST M

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MEDHSNMKSN QCPPLANPAP APAPFRGPYH RRAHSEVQFR LPEDLDLSEP FGGFDELGSE  60
DDLFCSYMDI EKLGTGSGSA SDSAGPSAPR SDNPFSAENG GGGRDEAGNS RPRHRHSLSV  120
DGSSTLESIE AKKAMAPDKL AELWVVDPKR AKRIIANRQS AARSKERKAR YILELERKVQ  180
TLQTEATTLS AQLSLFQRDT TGLSSENTDL KLRLQVMEQQ AKLRDALNDQ LKKEVERLKF  240
ATGEVSPADA YNLGMAHMQY SQQQPKQSFF QHHQQQTDAQ NLQQMTHQFH LFQPNNNQNP  300
NMTSSASRQN PPTAHQLMHH ATSNASGQSH SFSEAMHEDP LGRLQGLDIS SCGRGSNFGR  360
SDTVSESSST M

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g22950

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074269	0.0	AY074269.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBank	AY096746	0.0	AY096746.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBank	Z86093	0.0	Z86093.1 A.thaliana mRNA for b-Zip DNA binding protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411330.1	0.0	bZIP transcription factor 18
Swissprot	O22873	0.0	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	V4MJI3	0.0	V4MJI3_EUTSA; Uncharacterized protein
STRING	XP_006411330.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]