PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG042286t1

Common Name

TCM_042286

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 396aa MW: 43000.6 Da PI: 6.7509

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG042286t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.9	1.2e-09	197	245	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + Thecc1EG042286t1 197 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLFQ 245 9****************************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-15	193	257	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.542	195	258	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-8	197	245	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.95E-10	197	248	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.0E-9	197	251	No hit	No description
CDD	cd14703	3.96E-23	198	247	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MEIQDPQAKP GPNFNSSSIT RMSGPQPNAT AMFGSSSSSN HNNKSSNNNN PSNSSSSSAF 60 MRGGGGHHRR AHSEMSFRLP DDMSIMMMDL SPPSDPINAG GGSSTASFEE MGSEDDLFST 120 YIDVDKLNSS EATNGRTNCT DHSEGEKLTS SSTTATSSRP RHRHSNSVDG SAYGEVMEAK 180 KAMPPDKLAE LWNLDPKRAK RILANRQSAA RSKERKARYI LELERKVQTL QTEATTLSAQ 240 LTLFQRDTTG LSTENTELKL RLQAMEQQAQ LRDALNEALK KEVERLKIAT GEIMSPSESF 300 SLGMHQMPYT ASTFLSLPPQ QGAAGPQNMQ LPSFTGSQST MSTYHPPQMN QHHLSDIMQN 360 DPLGRLQGLD ISSKGSNLVK TEGPSISASE SSFTF*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MEIQDPQAKP GPNFNSSSIT RMSGPQPNAT AMFGSSSSSN HNNKSSNNNN PSNSSSSSAF  60
MRGGGGHHRR AHSEMSFRLP DDMSIMMMDL SPPSDPINAG GGSSTASFEE MGSEDDLFST  120
YIDVDKLNSS EATNGRTNCT DHSEGEKLTS SSTTATSSRP RHRHSNSVDG SAYGEVMEAK  180
KAMPPDKLAE LWNLDPKRAK RILANRQSAA RSKERKARYI LELERKVQTL QTEATTLSAQ  240
LTLFQRDTTG LSTENTELKL RLQAMEQQAQ LRDALNEALK KEVERLKIAT GEIMSPSESF  300
SLGMHQMPYT ASTFLSLPPQ QGAAGPQNMQ LPSFTGSQST MSTYHPPQMN QHHLSDIMQN  360
DPLGRLQGLD ISSKGSNLVK TEGPSISASE SSFTF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017082.1	0.0	PREDICTED: transcription factor RF2b
Swissprot	Q6S4P4	1e-105	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A061GYW1	0.0	A0A061GYW1_THECC; Basic-leucine zipper transcription factor family protein
STRING	EOY34701	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	5e-98	bZIP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG042286t1
Entrez Gene	18591090

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]