PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_04055_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 255aa MW: 28329 Da PI: 9.917 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34 | 6.5e-11 | 54 | 106 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l + Cotton_A_04055_BGI-A2_v1.0 54 KRAKRIIANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT 106 9****************************************999877666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.3E-17 | 50 | 114 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.622 | 52 | 115 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.8E-9 | 54 | 103 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.36E-11 | 54 | 105 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.2E-11 | 54 | 108 | No hit | No description |
CDD | cd14703 | 1.09E-21 | 55 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSGLSGKGEK NNGGGKGRHR YSNSIDGCSL MESIEAKKAM SPDKLVELWT IDPKRAKRII 60 ANRQSAARSK ERKARYISEL ERKVQTLQTE ATTLSAQLTL FQRDTTGLTT ENTELKLRLQ 120 AMEQQAQLRD ALNEALKKEV ERLKIATGEI TTPTDTFNLG MHHMPYNQSS FFPPQPEHMQ 180 VDTQNIQMPS FHPLRSNMLT PNQSVVTSSN SQAFADIMRQ DPLGRLQGLD ISSRSSHLVK 240 SESPSISAGE SSGTL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214418 | 8e-31 | AC214418.1 Populus trichocarpa clone POP106-D21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017603797.1 | 0.0 | PREDICTED: transcription factor RF2b-like | ||||
Swissprot | O22873 | 2e-90 | BZP18_ARATH; bZIP transcription factor 18 | ||||
TrEMBL | A0A1U8J7K9 | 0.0 | A0A1U8J7K9_GOSHI; transcription factor RF2b-like | ||||
STRING | Gorai.009G293600.1 | 1e-163 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4042 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 7e-91 | bZIP family protein |
Publications ? help Back to Top | |||
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