PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G218700.1 | ||||||||
Common Name | B456_010G218700, LOC105772563 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 365aa MW: 39491.9 Da PI: 6.1145 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.8 | 1.7e-11 | 163 | 221 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l + v l++e+ Gorai.010G218700.1 163 KRAKRIMANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDVTGLTTEN 221 9******************************************9999988888887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.1E-17 | 159 | 223 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.783 | 161 | 224 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.0E-11 | 163 | 217 | No hit | No description |
Pfam | PF00170 | 1.1E-9 | 163 | 221 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.05E-10 | 163 | 215 | No hit | No description |
CDD | cd14703 | 1.29E-24 | 164 | 215 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MQYPPLLNPN PLPPIPSKPN ASSTTQTALF FPNSTPFCGS HHRRAHSEVQ FRIPDELDLG 60 SDTFEGLGSE DDLFFNYVDI EKLGGSSKGP EEGGGSGSSS GGSGQNQKGE EISGGSGKGE 120 KNDGKGRHRY SNSVDGCSTM ELIEAKKAMP PDKLAELWNI DPKRAKRIMA NRQSAARSKE 180 RKARYITELE RKVQTLQTEA TTLSAQLTLF QRDVTGLTTE NTELKLRLQA MDQQARLRDA 240 LNEALKKEVE GLKIATGEAT TPTNTFNLGM HHIPYTQSSF LPPQPQHMQI DTQNIQMPPF 300 QPLQSNTLTT NPSVVGATNS YAFADMMQQD PLGQLQGLDI SSGGSHSVKS EGPSISTSES 360 SGTL* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012449360.1 | 0.0 | PREDICTED: transcription factor RF2b-like isoform X1 | ||||
Swissprot | O22873 | 1e-108 | BZP18_ARATH; bZIP transcription factor 18 | ||||
TrEMBL | A0A0D2UGT1 | 0.0 | A0A0D2UGT1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G218700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4042 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 5e-96 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G218700.1 |
Entrez Gene | 105772563 |